KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os01g0256900
Entry
Os01g0256900      CDS       T02163                                 
Name
(GenBank) Similar to SmX6 protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018  RNA degradation
dosa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Os01g0256900
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Os01g0256900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os01g0256900
   03041 Spliceosome [BR:dosa03041]
    Os01g0256900
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     Os01g0256900
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     Os01g0256900
Spliceosome [BR:dosa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    Os01g0256900
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-ProteinID: BAF04543
RAP-DB: Os01g0256900
UniProt: Q9LGE6
LinkDB
Position
1
AA seq 147 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGRGIGRGQDDG
GSKGGGGRGRGGIGGKGGIKGGGRGRG
NT seq 444 nt   +upstreamnt  +downstreamnt
atgcttccgctctcgctcctcaagaccgcccaggggcatcccatgctcgtggagcttaag
aacggcgagacgtacaacgggcacttggtgaactgcgacacgtggatgaacatccacctc
cgggaggttatttgcacctcaaaggatggtgataagttttggaggatgccagaatgttac
atccgtgggaacaccatcaagtatcttcgggttcctgatgaggtgattgacaaggtccag
gaagagacttcaaagagcagatcagataggaggccaccaggtgtaggccgcggaagagga
agaggtgatataggtactaagcctggaggcagaggcattgggcgtggccaggatgatggt
ggcagcaaaggcggtggtggccgtggaaggggaggaattggaggtaaaggtggcatcaaa
ggtgggggccgcggacgtgggtga

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