Oryza sativa japonica (Japanese rice) (RAPDB): Os01g0316600
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Entry
Os01g0316600 CDS
T02163
Name
(GenBank) Similar to ASF/SF2-like pre-mRNA splicing factor SRP30'
KO
K12890
serine/arginine-rich splicing factor 1
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os01g0316600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dosa03041
]
Os01g0316600
Spliceosome [BR:
dosa03041
]
Common components
Common spliceosomal components
SR proteins
Os01g0316600
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_YTH1
RRM_3
Motif
Other DBs
NCBI-ProteinID:
BAF04793
RAP-DB:
Os01g0316600
LinkDB
All DBs
Position
1
Genome browser
AA seq
178 aa
AA seq
DB search
FEDPRDADDAICGRDGYNFDGYRLRVELAHGGRGQSYSYDRPRSYSSGRRGGVSRRSEYR
VMVTGLPSSASWQDLKDHMRRAGDVCFSDVYREAGATVGIVDYTTYEDMKYAIRKLDDSE
FRNAFSRAYIRVREYDDRSRSRSRSYSRSRSYSRSTMAALIVDCIVPQICFSVTVTCG
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
tttgaggatccccgtgatgctgatgatgcaatttgcggccgtgatgggtataactttgat
ggctacaggttgcgggtggaattagctcatggtggaagaggtcaatcttactcatacgat
cgcccaagaagctatagcagtggacgacgtggaggtgtttctaggcgttctgaatatcgc
gttatggtcactggcttaccttcatcggcatcatggcaggatcttaaggaccatatgcgg
cgggctggtgatgtctgcttctctgatgtataccgtgaggctggagcaaccgttggaatt
gtggattatacaacctatgaagacatgaagtatgcgattaggaagcttgatgactcagag
ttcagaaatgcattttcacgggcatatatcagggtgagggagtatgatgatagatcaaga
agcagaagccgctcttactcaagaagtcgtagttacagcaggagcactatggcagcacta
attgttgactgcattgttccacagatctgtttctcggtcaccgtcacctgtggatga
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integrated database retrieval system
