Oryza sativa japonica (Japanese rice) (RAPDB): Os01g0546800
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Entry
Os01g0546800 CDS
T02163
Name
(GenBank) Virulence factor, pectin lyase fold family protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa00040
Pentose and glucuronate interconversions
dosa01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Os01g0546800
Enzymes [BR:
dosa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Os01g0546800
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-ProteinID:
BAF05198
RAP-DB:
Os01g0546800
UniProt:
A0A0P0V431
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Position
1
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AA seq
364 aa
AA seq
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MGASCSSPFPPPPSPAESNAPSASAMHHPPHPAAGGGGPVMPYADADRTLRALAGAAEGF
GRRAIGGLHGPLYRVTSLDDDGHGTLRQACRAHGPLWIVFDVSGDIHLRTYLRVTSHKTI
DGRGQRVRLLGKGLQLKECRHVIVCNLQIEGGRGHDVDAIQIKPSSADIWIDRCSLADCD
DGLVDITRGSTDVTVSRCRFSRHDKTMLVGADPSHTGDRGIRVTVHHCFFDGTRQRHPRV
RFGRAHLYNNYTRGWGIYAVAAGVEAQVASQCNVYEAGAERKAVFRYVPERAADREEAEA
GWVRSEGDAFLNGARPCLVDGGDAAVFRPEEYYERWTMEAASPALKEVVQLCAGWQPVPR
PPGE
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcctcctgctcctcccccttcccccctcctccttcacctgccgaatccaacgcc
ccctccgcctccgcgatgcaccacccgcctcaccccgcggccggaggaggaggacccgtc
atgccgtacgccgacgccgaccgcaccctccgcgcgctggccggcgcggcggagggcttc
ggccgccgcgccatcggcgggctccacggcccgctctaccgcgtcacctccctcgacgac
gacggccacggcaccctccgccaggcgtgccgcgcccacggcccgctctggatcgtcttc
gacgtctccggcgacatccacctccgcacctacctccgcgtcacctcccacaagaccatc
gacgggcgcggccagcgcgtgcgcctcctgggcaaggggctccagctcaaggagtgccgc
cacgtgatcgtctgcaacctccagatcgagggcgggcgcggccacgacgtggacgccatc
cagatcaagccctcctccgccgacatctggatcgaccgctgcagcctcgccgactgcgac
gacggcctcgtggacatcacccgcgggagcaccgacgtcaccgtctcccggtgccgcttc
tcccgccacgacaagaccatgctggtgggcgccgacccgtcccacaccggcgaccgcggc
atccgcgtcaccgtccaccactgcttcttcgacggcacgcggcagcgccacccgcgggtg
cggttcgggagggcgcacctgtacaacaactacacgagggggtggggcatctacgcggtg
gccgccggggtggaggcgcaggtggcgtcgcagtgcaacgtgtacgaggccggggcggag
aggaaggcggtgttcaggtacgtgccggagagggcggcggaccgggaggaggcggaggcc
gggtgggtgaggtcggagggggacgccttcctcaacggggcgcggccgtgcctggtggac
ggcggcgacgcggcggtgttcaggccggaggagtactacgagaggtggaccatggaggcg
gcgtcgccggcgctcaaggaggtggtgcagctgtgcgccgggtggcagcccgtgccgagg
ccaccgggcgagtga
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