Oryza sativa japonica (Japanese rice) (RAPDB): Os01g0549400
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Entry
Os01g0549400 CDS
T02163
Name
(GenBank) Similar to RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os01g0549400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dosa03041
]
Os01g0549400
03009 Ribosome biogenesis [BR:
dosa03009
]
Os01g0549400
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Os01g0549400
Spliceosome [BR:
dosa03041
]
Complex A
U1 snRNP components
U1 related factors
Os01g0549400
Complex B
Os01g0549400
Ribosome biogenesis [BR:
dosa03009
]
Eukaryotic type
Pre-60S particles
Helicases
Os01g0549400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAF05209
RAP-DB:
Os01g0549400
UniProt:
Q5JKF2
LinkDB
All DBs
Position
1
Genome browser
AA seq
792 aa
AA seq
DB search
MSAGTAPAAPRYAPDDPSLPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPPEDQLPPPP
PLPPPPPRSGRGDRDRDRRDRSRSRTPPRRDHRDRDRDRDRRHDDHRSAPSHHHPLPAAA
AIAADDPSTEAYRHRHEITVVGDNVPAPITSFETGGFPPEILKEIQRAGFSSPTPIQAQS
WPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSGPTVLVLAPTRELATQILE
EAVKFGRSSRISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYL
VLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSV
DELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQFG
ASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVH
RIGRTGRAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRDLADMASRGGRGGRKRNR
WATRSDRGGSHSELDSRYGGRDGLSGSSGRLDSSRSSRRHDYGDDGRSRRSGRGRSRSRS
RSDSDRYSRSPKRSRRHSRSRTRSRSRSRSRSYTRNRRASRSRSRSPGASRRHERSATGS
GSALPDSGHGERKRTPEADPSRNHTNHSDPKDDRHPEDGKVGKVDLDRSPTPQDKSGPYS
PAYNGKTSRSVSPGNQVEGNNKAAEVSKNPDPSSPPHHGKTREDEEEGMIDEDGEIADDP
RANATVQNGGDN
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcagggaccgccccggccgcgccgcggtacgcgccggacgacccgtcgctcccc
aagccgtggcgcgggctcgtcgacggcaccaccggctacctctactactggaacccggag
accaacatcacccagtacgagaagccgctgccgcccgaggaccagctcccgccgcccccg
ccgctccccccgccgcctccccgctccggccgaggcgaccgagaccgcgaccgccgcgac
cgctcccgatcccgcaccccgccgcggcgcgaccaccgggaccgcgaccgggaccgcgac
aggcgccacgacgaccacaggtcggcgccttcccaccaccatcctcttccggccgccgcc
gccatcgccgccgatgatccctccaccgaggcgtatcgccaccgccacgagatcaccgtt
gtcggggacaacgtgccagctccgataacttcgtttgagactggtggattcccaccggaa
atcctcaaggagatacaacgtgctggattctcaagtccaacgccaatccaagctcagtca
tggccaattgccttgcagtgtcaagatgttgtagctattgcaaagacaggatctggaaaa
actcttgggtatctacttcctggatttatgcatattaaacgcttgcaaaacaacccaagg
tctggtccaacagtgctagttttggcaccgacaagggagcttgcaactcagattttggaa
gaagctgtgaaatttggcagatcatcaagaatttcttccacgtgtctatatggtggtgct
ccaaaaggcccccagctaagagatttggatagaggggtcgatgtcgttgttgctacacca
ggaaggttgaatgacatcctagaaatgcgaaggataagccttaagcaagtgtcgtacctt
gttctagatgaagctgaccgtatgttggacatgggatttgaaccacaaattcggaagata
gtgaaagaaattcctcctcgtcggcaaaccctcatgtacactgctacttggcctaaggaa
gtccgacgaattgcagaggatcttcttgttcaccctgtccaggtgaccattggaagtgtt
gatgagcttgttgctaatagtgctattactcagaatgtggagctgatcacaccgtccgaa
aagcttcgccgtctggagcaaattttgcgatcccaggattcaggttcgaaggtactaata
ttctgtaccactaagagaatgtgcgaccaacttgcaaggacacttactaggcaatttgga
gcttctgccattcatggtgataagtcccaaagtgaaagagagaaggtcctgagccatttt
agatctgggcgatctcctattttggttgcaacagatgttgctgcacgaggcttagacatc
aaagatatcagggttgtgatcaattatgatttccccactggcattgaagattatgttcac
cggattggcaggactggaagggctggtgccactggtgtggcctatacgtttttctgtgac
caggattcaaaatatgctgctgatcttattaaaattctggaaggcgcaaaccaacgtgtg
cctcgtgacttggcggacatggcctctcggggtgggcgtggtggtaggaagcgtaaccgg
tgggcaacccgctctgataggggtggttcgcattctgaactggattctaggtatggtgga
agagatggtctgtcagggtcttctggcagattggatagtagtcgcagtagtcgcaggcat
gactatggtgatgatggacggtctcgcaggtctgggagaggtcgcagtaggagccgtagc
agaagtgacagtgataggtatagccgaagtcctaagaggtcacgccgtcatagccgtagc
aggaccaggagtcggagccgaagcaggagcaggagctacactaggaaccgtcgtgctagc
cgcagcaggagccgtagccctggtgctagccgtaggcatgaaagaagcgctactggctct
gggtctgcactgccagactctgggcacggtgagcgcaaaagaacaccagaagctgaccca
tcaagaaaccatacaaaccactcagacccgaaagatgaccgacacccagaggatgggaag
gtgggaaaggttgatctcgatcggtcgcctactccacaagacaagtctggcccatatagt
cctgcttacaatggaaaaaccagtcgctcagtgagccctggtaatcaggtggaaggaaac
aacaaagctgcggaggtttctaagaatcctgatccttcatcgccaccccatcatggtaag
accagggaggacgaagaggaaggtatgatagatgaagatggagagatagctgatgatcct
cgggcaaatgcaaccgtgcagaatggcggtgataattga
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