Oryza sativa japonica (Japanese rice) (RAPDB): Os01g0549700
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Entry
Os01g0549700 CDS
T02163
Name
(GenBank) Similar to RNA helicase (Fragment)
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03013
Nucleocytoplasmic transport
dosa03015
mRNA surveillance pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os01g0549700
09122 Translation
03013 Nucleocytoplasmic transport
Os01g0549700
03015 mRNA surveillance pathway
Os01g0549700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os01g0549700
03041 Spliceosome [BR:
dosa03041
]
Os01g0549700
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Os01g0549700
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Os01g0549700
Spliceosome [BR:
dosa03041
]
Complex C
Other components
EJC/TREX
Os01g0549700
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Os01g0549700
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-ProteinID:
BAF05211
RAP-DB:
Os01g0549700
UniProt:
Q0JM17
LinkDB
All DBs
Position
1
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AA seq
495 aa
AA seq
DB search
HTPNSKSLPPPRTLAPSPPLSLSLSLSLSLSLSLCSRRRRRRRRRRVRFDSRRQVLSLQR
AGTMAEAEVKDNEVYEEDLVDYEEEVENGTDGGANAANASADVVKKGYVGIHSSGFRDFL
LKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVA
GQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVG
TPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATL
SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVV
IFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGI
DIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDI
KELPEQIDTSTYMPS
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
cacaccccaaattccaaatcgctacctcccccaagaaccctagctccctctccccccctc
tctctctctctctctctctctctctctctctctctctctctttgcagccgccgccgccgc
cgccgccgccgccgccgcgtccgcttcgactcccgccgccaggttctctctctccagcgc
gcaggcaccatggccgaagccgaggttaaggacaacgaggtttacgaggaggatctcgtc
gactacgaggaggaggtggagaacggcaccgacggtggcgccaacgccgccaacgcctcc
gccgatgtcgtcaagaaggggtacgtggggatccacagctcggggttcagagacttcctg
ctcaagccggagctgcttcgcgccatccaggactgcgggtttgagcacccttccgaagtg
caacacgaatgcatcccacaagccattcttggaatggatgtcatctgccaagcaaaatct
gggatggggaagactgctgtttttgttctctcaagtcttcagcaaattgatcctgttgct
ggtcaagttggtgcacttgtgctatgtcacacaagggagctagcttaccagatttgccat
gaatttgagaggtttagcaagtaccttcctgaggtaaaagttgcggtcttctatggtggt
gttcacataaaaaaacacaaggatctgttgaagaatgactgccctcatattgtggttgga
acacctggaaggatactagctctagctagagagaaggatctttccttgaagaatgtgagg
catttcattcttgatgaatgtgacaagatgctcgattcacttgacatgcgtagagatgtg
caggagatcttcaaaatgacaccccatgataagcaagtgatgatgttttcagcgaccctt
agcaaggagatccgcccagtttgcaagaaattcatgcaagatcctatggaaatttatgtt
gatgatgaggctaaactgacccttcatgggctagttcagcactatattaaactaagtgag
gcggagaagaaccggaaattgaatgatctcttagatgcactggacttcaatcaagttgtg
atatttgttaaaagtgttagtagagctgcagaactgaacaagctgctttgtgaatgcaac
tttcctgcgatctccatacattctggaatgacacaggaggagaggcttacccggtacaag
aacttcaaggaaggacacaagaggattcttgtggctactgatttagttggcaggggaatt
gatattgaacgtgtcaacattgtcataaactatgacatgcccgattctgctgattcgtat
ctacacagggttggaagggctgggcgttttggaaccaaaggacttgcaataacatttgtt
tcctctgcctctgactctgatgttcttaatcaagtgcaagaaagattcgaggttgacata
aaggagcttcctgagcagattgatacttcgacatatatgccttcttaa
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