Oryza sativa japonica (Japanese rice) (RAPDB): Os01g0550000
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Entry
Os01g0550000 CDS
T02163
Name
(GenBank) DEAD/DEAH box helicase, N-terminal domain containing protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03013
Nucleocytoplasmic transport
dosa03015
mRNA surveillance pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os01g0550000
09122 Translation
03013 Nucleocytoplasmic transport
Os01g0550000
03015 mRNA surveillance pathway
Os01g0550000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os01g0550000
03041 Spliceosome [BR:
dosa03041
]
Os01g0550000
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Os01g0550000
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Os01g0550000
Spliceosome [BR:
dosa03041
]
Complex C
Other components
EJC/TREX
Os01g0550000
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Os01g0550000
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-ProteinID:
BAF05212
RAP-DB:
Os01g0550000
UniProt:
Q5JK84
LinkDB
All DBs
Position
1
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AA seq
432 aa
AA seq
DB search
MGEAEVKDNEVYEEDLVDYEEEVENGADGGAAAANASADVVKKGYVGIHSSGFRDFLLKP
ELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQV
GALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPG
RILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSKE
IRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFV
KSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIE
RVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKEL
PEQIDTSTYMPS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaagctgaggtcaaggacaacgaggtgtacgaggaggatctcgtcgactacgag
gaggaggtcgagaacggcgccgacggcggcgccgccgccgccaacgcctccgccgacgtc
gtcaagaaggggtacgtggggatccacagctcggggttcagagacttcctgctcaagccg
gagctgcttcgcgccatccaggactgcgggtttgagcacccttccgaagtgcaacacgaa
tgcatcccacaagccattcttggaatggatgtcatctgccaagcaaaatctgggatgggg
aagactgctgtttttgttctctcaagtcttcagcaaattgatcctgttgctggtcaagtt
ggtgcacttgtgctatgtcacacaagggagctagcttaccagatttgccatgaatttgag
aggtttagcaagtaccttcctgaggtaaaagttgctgtcttctatggtggcgttcacata
aaaaaacacaaggatctgttgaagaatgactgccctcatattgtggttggaacacctgga
aggatacttgctctagctagagaaaaggatctttccttgaagaatgtgaggcatttcatt
cttgatgaatgtgacaagatgctcgattcgcttgatatgcgtagagatgtgcaggagatc
ttcaaaatgacaccccatgataagcaagtgatgatgttttcagcgacccttagcaaggag
atccgcccagtttgcaagaaattcatgcaagatcctatggaaatttatgttgatgatgag
gctaaactgacccttcacgggcttgttcagcactatataaaactaagtgaggcggagaag
aaccggaaattgaatgatctcttagatgcacttgacttcaatcaagttgtgatatttgtt
aaaagtgttagtagagctgcagaactgaacaagctgctttgtgaatgcaactttcctgcg
atctccatacattctggaatgacacaggaggagaggctgacccggtacaagaacttcaag
gaaggacacaagaggattcttgtggctactgatttagttggcaggggaattgatattgaa
cgtgtcaacattgtcataaactatgacatgcccgattctgctgactcgtatttgcacagg
gttggaagggctggacgttttggaaccaaaggacttgcaataacatttgtttcctctgcc
tcagactctgatgttcttaatcaagtgcaagaaagattcgaggttgacataaaggagctt
cctgagcagattgatacttcgacatatatgccttcgtaa
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