Oryza sativa japonica (Japanese rice) (RAPDB): Os01g0767700
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Entry
Os01g0767700 CDS
T02163
Name
(GenBank) Similar to DEIH-box RNA/DNA helicase
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os01g0767700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os01g0767700
03012 Translation factors [BR:
dosa03012
]
Os01g0767700
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Os01g0767700
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
Os01g0767700
Translation factors [BR:
dosa03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
Os01g0767700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_C
R3H
DEAD
OB_NTP_bind
HA2_N
nSTAND3
AAA_19
Ank_2
ATPase
AAA_22
Ank_5
ResIII
AAA_23
AAA_16
Rad17
AAA_7
AAA_11
ABC_tran
PhoH
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BAF06276
RAP-DB:
Os01g0767700
UniProt:
Q0JJ02
LinkDB
All DBs
Position
1
Genome browser
AA seq
1223 aa
AA seq
DB search
MVRRGRKGKDAAAGAGGTGGRGGGAGRGGGRGGSGGGGGGGGVREATLVRVSKVLEDFQA
SDAQVYKFEPGISKQERAAIHEMCRKMGMISKSSGNGERRCLSVYKRKQNQGLETEEGPS
HLGFSVEARNVLQDLFMHYPPDDAELNGHTVRNSSDKAVKIQWKPDGAFCRPALRKPDIL
KKVEMLASKVNKSEQLRKIVQDRSKLPISSYKDAISSTLENHQVVLISGETGCGKTTQVP
QYILDHMWGKGESCKIVCTQPRRISAISVAERISAERGESVGDTVGYKIRLESKGGKNSS
IMFCTNGVLLRLLIGRVTNISKEQNQKRSFDDAVTGITHIIVDEIHERDRFSDFMLAILR
DLLPLYPHLRLVLMSATIDAERFSNYFSGCPFIQVPGFTHPVKTFYLEDVLSILQSVGDN
HLDPTTDDLKQSSLLTDDYKSSMDEAINLALDNDEFDPLLELISAEQNQEIFNYQHSETG
VTPLMVLAGKGQVGDICMLLSFGVDCSTRDHDGKSALGWAEQGNQQEVCEVIKKHMECGS
AKLTEENELLNKYLATINPEHIDTVLIERLLRKICVDSNEGAILVFLPGWEDINQTRERL
LASPFFQDSSKFLVLSLHSMIPSSEQKKVFKRPPAGSRKIILSTNIAETAVTIDDVVFVI
DSGRMKEKSYDPYNNVSTLHSSWVSKANARQRQGRAGRCQPGTCYHLYSRFRAASLLEYQ
IPEIKRMPIEELCLQVKLLDPNCRIADFLRKTLDPPIPETVRNAITVLQDLGALTQDEQL
TELGEKLGSLPVHPSTSKMLLFGILMNCLDPALTLACAADYRDPFLLPMAPDERKRAAAA
KVELASLYGGYSDQLAVVAAMDCWRRAKDRGQEAQFCSKYFVSSNTMNMLSNMRKQLQNE
LAQRGFVPVDASACSLNARDPGIIRAVLMAGAYPMVGRLLPPRKNTRRAVIETASGAKVR
LHPHSCNFNLSFRKTSGNPLVIYDEITRGDGGMYIKNSSVVGSYPLIILATEMVVAPPED
DDSDEEDGDSSEDETEKVTLGQHKEIMSSPDNSVSVVIDRWLRFDATALDVAQIYCLRER
LASAILFKVKHPQDVLPPDLGATMYAIACILSYDGLPAMITSDDVATSQGSNQSSAESSR
FSQGRRVGYIPPGGFLMSLLSDKPLNAPHFQKSFNHPDGASGHIRSSRTSVGRFDQSRHP
QRNNSGPGSSAARTFKRQRNGAQ
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggtgaggagagggcggaagggcaaggacgcggcggctggcgccggcggcaccggtggc
agaggcggcggtgccggcagaggaggcggcagaggaggaagcggcggcgggggcggggga
gggggtgttcgggaggcgacgctggtgcgcgtctcgaaagtgctcgaggacttccaagcc
tccgacgcccaggtgtacaaatttgaacctggcatatcgaaacaagagcgagcggcgata
catgagatgtgtagaaaaatgggcatgatatccaaaagttctgggaatggggaacgacga
tgcctatctgtttacaaaagaaaacagaaccagggccttgaaacagaagaaggacctagc
catcttggattttctgtggaagcgagaaatgttttgcaagatctatttatgcattatccc
ccagatgatgcggagctaaatgggcatactgtcaggaattctagtgataaggctgtaaag
attcagtggaagccagatggtgcattttgtaggccagcattgcgcaaaccggatatattg
aagaaggtggagatgcttgcatcgaaagtaaataaatccgaacagttgaggaagattgtc
caagatagatctaaacttccaatttcctcatacaaggatgcaatttcttcgactttagag
aatcaccaggtggttcttatttctggagaaacaggatgtggtaaaacaacacaggttcct
caatatatcttggatcatatgtggggtaagggtgaatcatgtaagattgtatgcactcaa
ccaaggcgaatatcagctatctcagttgctgagagaatctctgcggaaagaggagagtct
gtgggtgacacagttgggtataagatacgcttggagtcaaaaggagggaagaactcatca
atcatgttctgcacaaatggtgttcttttgaggctattgataggcagggtaactaatatt
tcaaaagaacaaaatcagaaacgctcatttgatgatgcagttactgggataacacatatt
attgtggatgaaatccatgaaagggacaggttttcagatttcatgttggctattctaaga
gatttgctgccgttgtatcctcatctgcgtttggtactcatgagtgcaacgattgatgct
gagcggttctcaaattatttcagtggatgcccatttattcaagtcccagggtttacccat
cctgtcaaaactttctatttggaggatgtgctttctattttgcaatctgtaggcgataat
catcttgatcctacaacagatgatctgaaacagagcagtttgttaacagatgattacaaa
agctcaatggatgaagccattaacctagctttggataatgatgaatttgatcctcttctt
gagcttatttctgctgagcagaaccaagaaattttcaattaccagcactcagaaactggt
gtgacacctttgatggttcttgctggaaaaggtcaggttggggacatttgcatgcttcta
tcatttggggtggattgttctacacgggatcatgatggaaaatctgcattaggttgggca
gaacaagggaatcagcaagaggtttgcgaagttattaagaaacatatggaatgtggttca
gcaaagttaactgaagagaatgagctgctcaataaatacttggcaaccatcaatcctgag
cacatcgatactgtgctaatagaacggttgctcagaaaaatttgtgttgattccaatgaa
ggagctatcttggtgtttcttcctgggtgggaagatataaatcaaacacgggaaaggttg
cttgcttctcccttctttcaggattcgtcaaagtttcttgtgttgtcactccattccatg
atcccatcttcggagcagaaaaaagttttcaagcgtccaccagcaggatctcgtaaaata
attctctcaaccaacatagcagagactgctgtgacaattgatgacgtcgtatttgtcata
gatagtgggagaatgaaagagaaaagttatgatccatataataatgtctcaacacttcat
tcttcctgggtttcaaaagctaatgccagacaacgtcaagggcgtgcgggtcgttgtcag
ccaggaacgtgctaccatctctactctagatttcgagcagcctcattactggaataccaa
atccctgaaataaagaggatgcctattgaggaactatgtttacaggtcaaactgcttgat
ccgaactgcagaattgcagactttttaaggaaaactttggaccctccaattccagaaact
gtaagaaatgctatcaccgtacttcaggatcttggtgctttgactcaagatgaacaactg
acagagttaggggaaaagttgggctcccttccggtccatccatctacaagcaagatgctc
ttgtttggtatattaatgaattgcctagatccggcgttgacattggcatgtgcagcagat
tatagagatcctttcctccttccaatggctccagatgagaggaaaagggctgctgcagcc
aaagttgagcttgcttcattgtatggtggatacagtgatcagcttgcagttgtagcagca
atggactgttggagacgtgccaaagataggggccaagaagctcaattttgttctaagtat
tttgtgtcttctaacaccatgaatatgctttcaaacatgaggaaacagcttcagaatgaa
ctagcccaaagaggatttgttcctgtagatgcatctgcatgcagcttaaatgctagagat
ccaggtatcattcgtgctgtccttatggccggtgcttatccaatggtagggagattgctt
ccccctcgcaaaaatactagaagagcagtcattgaaacagcaagtggtgccaaagttcga
ctgcatccacattcttgcaactttaacttgtctttccgtaagacttctgggaacccatta
gtgatatatgatgagatcactcgaggcgatggtggaatgtacataaaaaactcttcggtt
gttgggtcctatcctttaattattcttgctacggaaatggttgttgctccacctgaggac
gatgatagtgatgaagaggatggggattctagtgaggatgaaactgagaaagtcactttg
ggacaacataaagagataatgtcttctcctgataactctgtttcagttgttattgatcga
tggcttcggtttgatgctacagctcttgatgttgctcaaatatactgccttagggagcgc
ctagcatcagctattcttttcaaagtcaaacatccacaggatgtcctcccacctgatctt
ggagcaactatgtatgctattgcgtgcatcctatcatacgatggcttgcctgctatgatt
acatctgatgatgttgctacaagtcagggttcaaaccaaagttcagctgaatcaagcaga
ttctctcagggtcgtagagtcggttatattccacctggcggtttcctcatgtctttgtta
tcggataaacctcttaatgcgcctcattttcagaagtcctttaatcatccagatggagct
tcagggcatattcggtcatcgaggacctccgtcggtagatttgatcagtctcgccatcct
caacgtaataattctggacctgggagttcagcagcacggactttcaaaagacagcgcaac
ggtgcacagtga
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integrated database retrieval system
