Oryza sativa japonica (Japanese rice) (RAPDB): Os01g0844800
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Entry
Os01g0844800 CDS
T02163
Name
(GenBank) Similar to Pumilio RBD (Fragment)
KO
K17943
pumilio RNA-binding family
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NABP
PUF
PUF_NOP9
DUF445
Motif
Other DBs
NCBI-ProteinID:
BAF06696
RAP-DB:
Os01g0844800
UniProt:
Q0JHT2
A0A0P0VA86
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Position
1
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AA seq
1060 aa
AA seq
DB search
MISASAVAMRGEMGGGGGGGDEGELEDELDALLGTGGAGARRRGEDAGERERELNMFRSG
SAPPTIEGSLNAISGLLRGGGEAAVTVAAIPDAETLNGHGGLLSEDELRADPAYLSYYYS
HGNLNPRLPPPVLSKEDWRSTQRLKAGVVGGIGDGRKVSPEETGHEPTVGRPVFSQNVGF
DQEEAARNDVGGAAEWVDGGGDGLIGLSLGRQRSFADILQDNIGRRTPASEHPSRAVSRN
SFLDNQELLNSADSQYSMHNDILEAQRAVGNVQNVSGLPSINASASQTFASVLGSSISRN
ATPDSHYVPRVPSPGLPPVGVRINSNEKKLNCSSSFNTASSKAVEPDDILAAISNMNMSK
DGTLGDSNSISQSKFQSEISDHQNISLDPKALQVNKNQHSLMLEADTDYLGIPPISQPSN
PSFSDINKNVSGLANIRNSTNTRIDGHAEMQRSSTLSTRSYQKSPTSSNASPGGSPAQHQ
NIDNINSAFLNYGLGGYPLSPGLPSMMMNCMGSGNMPPLFESAAAASAIASFGADSRNLG
NNILSSPTLSLSDVHNLGRTGNQTATGLLSPLSDPFYVQYLKATQYAAQGTANCSDPSLE
RGFMGSQYGDLTAVQKAYIEALLQQQKQYGMPLGKSTTSNHGYYGNLAFGMGMAYPGSPL
GSPVASPSGPGSPLRLSERNMRFPSNLRNLGGWNSDPSGYMNDNFPSSLLDEFKSNKARS
FELAEIASHVVEFSADQYGSRFIQQKLETATVEEKDMVFKEIMPQALSLMTDVFGNYVVQ
KFFEHGSAAQRRELADQLFGHVLALSLQMYGCRVIQKAIEVVDLDQKTKMVTELDGHIMR
CVRDQNGNHVIQKCIECVPEDSIQFIISTFYGQVVPLSTHPYGCRVIQRVLEHCTDPKTQ
EIVMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSVIIEKLAGQIIQMSQQKFASNVV
EKCLTFGGPAEREVLINEMLGTTDENEPLQAMMKDQFGNYVVQKVLETCDDQQRELILSR
VKVHLSALKKYTYGKHIVARVEKLVAAGERRIGLQAQYPS
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgatcagcgctagcgctgtggcgatgcgtggggagatgggtggcggtggcggcggcggc
gatgagggagagctggaggacgagcttgatgccctcctcggaaccggtggcgctggcgcg
cgtcggcgaggtgaggacgcgggagagagggaacgggagctcaacatgttcaggagcggg
tcggcgccgccgactatagagggttcgctgaacgccatcagcgggctgctccgcggcggt
ggagaggcagccgttaccgttgcagcgattcccgacgctgagacgttgaacgggcatggt
ggtctcctctcggaggatgagctccgggctgacccggcctatctatcctactactactcg
catggcaatctgaacccaaggttgccaccgccggtgctatccaaggaggactggcggtcc
acacagagactgaaggcgggggtggttggaggaattggtgacggaaggaaggtatcgccg
gaggagactggacatgagccgacggtggggaggcctgtgttctcgcagaatgttggtttt
gatcaggaggaggctgcaaggaatgatgtaggtggtgctgcagagtgggtggatggtgga
ggtgatgggctgattggtttgtcgcttgggcggcagcgcagctttgctgatatccttcag
gacaatattggccgcagaactcctgcttcagagcatccctctcgtgcagttagtcgcaat
tcttttcttgacaatcaggaactactaaattctgctgatagccagtactccatgcataat
gatattctggaagcacaacgtgctgtcggaaatgtgcaaaatgtcagtggccttcccagt
attaatgcatccgcatctcaaacttttgcatctgttctgggttcatctatttcaaggaat
gccacaccagattctcattatgtccctagggtccctagtcctggccttccacctgtcggt
gttaggattaattctaatgagaagaagctgaattgctcatcatcattcaacactgcatct
tcaaaagcagttgagcctgatgatattttagctgcaatatcaaacatgaacatgtcaaaa
gatggtactttgggtgacagtaacagcattagtcaatcaaagttccaaagtgagataagt
gaccaccagaatatttctcttgatccaaaagctctccaagttaataagaatcagcattcg
ctgatgttggaagctgatactgattatttgggtataccaccaatttcacaaccttcaaat
ccttccttttctgatattaacaagaatgtctcaggtttagcgaacataagaaattctact
aacacacgtatagatggacacgcggagatgcaaaggtcttctactttgtctactcggtca
tatcagaagtccccaacatcttccaatgcgagcccaggtggttctcctgctcaacaccag
aatattgacaatataaattcagcctttttgaactatggactcggtgggtatccactcagc
ccgggtttgccttctatgatgatgaactgtatgggctctggcaatatgcctcctttgttc
gaaagtgcagctgctgcatctgctatagcttcattcggggcagattcgagaaaccttggt
aacaatattttgtcgtcacctaccttaagtctatctgatgtgcataaccttggcagaact
ggtaaccaaacagccacaggtcttttgtcgcctctttctgatccattttatgtccagtac
ttgaaggcaactcaatatgcagcacaaggaactgccaactgcagtgatccttccttggaa
agaggtttcatgggtagtcaatatggtgatttaactgctgttcagaaagcttatattgaa
gctttgcttcagcagcagaaacaatatggaatgccacttggtaagtcaaccacgtcaaac
catggctattatggcaatttggcttttggcatgggcatggcataccctggaagccctttg
ggaagtcctgttgcttctccatctggtcctggcagtccacttagactcagtgagcggaat
atgagatttccttctaacttgagaaacttgggtggctggaattctgatccaagtggctat
atgaatgataacttcccatcttcactattggatgaattcaaaagtaataaggccagaagt
tttgaacttgctgagattgccagtcatgtggttgagttcagcgctgaccaatacggaagc
cgtttcatacagcaaaaacttgaaaccgcaacagttgaggaaaaagacatggtttttaag
gagatcatgcctcaggctctctcgttgatgaccgatgtatttgggaactacgtggtgcag
aagttctttgagcacgggagtgcagcacagcgtagggagctggctgatcaactatttgga
catgtgttagctctcagccttcagatgtatggatgccgagttatccaaaaggcaatagaa
gtggttgacctggaccagaagacaaaaatggttactgagcttgatggccatatcatgaga
tgcgtgcgtgatcaaaatggaaaccatgttatccaaaaatgtattgaatgtgtaccggaa
gattcgattcagtttatcatctcaacattctatggtcaagttgttccattatccactcat
ccctatggctgcagagtcatacagagagtactggagcattgcactgatccaaaaacacag
gaaatagtcatggatgaaatattgcaatctgtgtgcatgttggcacaagatcaatatgga
aattatgttgttcagcatgttttggagcacgggaagcctcatgagcgatctgtcattatt
gaaaaactagctgggcagatcattcagatgagccaacagaaatttgcctcaaatgttgtt
gagaagtgtttaacatttggcggacctgcagagcgggaagttcttataaatgaaatgctc
ggaactactgacgagaatgagcctcttcaggccatgatgaaggatcagtttggtaactat
gttgtacagaaagtactggagacttgtgatgatcagcagcgtgagttgatcctgtcacga
gtaaaggttcatttaagtgcactgaagaaatatacatatgggaagcacatagttgcccgg
gtagaaaaacttgttgctgccggtgagaggaggattgggcttcaggcacaatatccttca
taa
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integrated database retrieval system
