Oryza sativa japonica (Japanese rice) (RAPDB): Os01g0909200
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Entry
Os01g0909200 CDS
T02163
Name
(GenBank) DEAD/DEAH box helicase, N-terminal domain containing protein
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os01g0909200
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
Os01g0909200
microRNA pathway
RISC loading complex
Os01g0909200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
DEAD
ResIII
PAZ
PCDO_beta_N
Motif
Other DBs
NCBI-ProteinID:
BAF07062
RAP-DB:
Os01g0909200
UniProt:
Q5N870
LinkDB
All DBs
Position
1
Genome browser
AA seq
1651 aa
AA seq
DB search
MNPLKRSLESSSQEHEAGKQKLQKRECQDFTPRRYQLDVYEVAMRRNTIAMLDTGAGKTM
IAVMLIKEFGKINRTKNAGKVIIFLAPTVQLVTQQCEVIEIHTDFEVEQYYGAKGVDQWT
GPRWQEQISKYQVMVMTPQVFLQALRNAFLILDMVSLMIFDECHHATGNHPYTRIMKEFY
HKSEHKPSVFGMTASPVIRKGISSHLDCEGQFCELENLLDAKIYTVSDREEIEFCVPSAK
EMCRYYDSKPVCFEDLSEELGVLCSKYDALITELQNKRSDMYKDADDITKESKRRLSKSI
AKICYCLDDVGLICASEATKICIERGQEKGWLKEVVDATDQQTDANGSRLFAENSALHMK
FFEEALHLIDKRLQQGIDMLLNSESGCVEAAKTGYISPKLYELIQIFHSFSNSRHARCLI
FVDRKITARVIDRMIKKIGHLAHFTVSFLTGGRSSVDALTPKMQKDTLDSFRSGKVNLLF
TTDVAEEGIHVPECSCVIRFDLPRTTRSYVQSRGRARQEDSQYILMIERGNVKQNDLISA
IVRSETSMVKIASSRESGNLSPGFVPNEEINEYHVGTTGAKVTADSSISIVYRYCEKLPQ
DKCYSPKPTFEFTHHDDGYVCTLALPPSAVLQILVGPKARNMHKAKQLVCLDACKKLHEL
GALDDHLCLSVEDPVPEIVSKNKGTGIGTTKRKELHGTTRIHAWSGNWVSKKTALKLQSY
KMNFVCDQAGQIYSEFVLLIDATLPDEVATLEIDLYLHDKMVKTSVSSCGLLELDAQQME
QAKLFQGLLFNGLFGKLFTRSKVPNAPREFILNKEDTFVWNTASVYLLLPTNPSFDSNVC
INWSVIDAAATAVKLMRRIYSENKRELLGIFDSDQNVGDLIHLANKSCKANSLKDMVVLA
VHTGKIYTALDITELSGDSAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPS
HNPHNLLSSKFRDEGNVVENMSNGTPVVNKTSNRVHMPPELLIPLDLPVEILRSFYLFPA
LMYRIESLTLASQLRSEIGYSDSNISSFLILEAITTLRCSEDFSMERLELLGDSVLKYAV
SCHLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDAAFDPRRWLAPGQLSI
RPSPCECPVKSEVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIADCVEAIIGAYYAGGG
LRAAMAVLKWLGIGAEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVE
ALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENF
AQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVESI
AGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFVGINCRDQGD
TVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTEQFEKHC
GSTNPFNNLHVDAMDTQTPKPTKEKNAADSRNISDPLLGKPLHVIVKTSKGGPRIALYEL
CKKLQWPMPTMESEKVQPSFSSVCSSPGGSSQKATPQAFAFASTITLHIPNADVISLTGD
GRADKKSSQDSAALFLLYELQRRGTLQLQEV
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atgaaccctttaaagaggtcattggaatcatcttctcaggaacatgaagcaggcaaacag
aaactgcagaagagagagtgtcaagatttcactcccagaagatatcagcttgatgtctat
gaggttgcaatgcggagaaacacgattgcgatgcttgacacaggagccgggaagacaatg
attgctgtgatgcttatcaaggagttcggaaagataaacagaacaaagaatgctggaaaa
gtcatcatatttcttgcaccaacagttcaacttgttacacagcaatgcgaggtgattgaa
atccacacagattttgaggtagaacaatactatggtgcaaagggggttgatcaatggaca
ggtcctagatggcaagagcaaatctcaaaataccaggtcatggtcatgacaccacaggtg
ttcctacaagctttacgcaatgctttcttaatcttggacatggttagtctcatgatattt
gatgaatgccatcatgcaactggaaaccacccttatacaagaataatgaaggagttctat
cacaaatcagaacataagccaagtgtgtttggtatgacagcatcacctgttataagaaaa
ggtatctcttctcatttggattgtgaaggtcagttctgtgaattggagaacctgttagat
gctaagatctacacagtttcagatagagaagagatagagttttgtgttccttctgcaaaa
gaaatgtgcaggtactatgactcgaaaccagtttgttttgaagatttgagtgaagaattg
ggagttttatgttccaagtatgatgcattgataacagagttgcagaataagcgaagcgac
atgtataaagatgctgatgatataacaaaagaatcaaagagacgcctttctaaatctata
gcaaaaatttgctactgccttgatgatgttggtcttatttgtgcaagtgaggccacaaaa
atctgcattgaaaggggccaggagaaaggttggctgaaggaagtagttgatgccacagat
cagcaaactgatgcaaatggatcacgcctatttgcagaaaattcagcgcttcatatgaag
ttctttgaggaagccttgcatttaattgacaaacgcctccaacaaggtatcgacatgctt
ctaaactcagaaagtggatgtgttgaagcagcaaagacgggctatatttccccaaagctc
tatgaactcatccagatctttcactcttttagtaactctcgtcatgctcgatgcctcatt
tttgttgatcgaaagatcactgctagagtcattgaccggatgattaagaaaattggccac
cttgcacatttcacagtttcttttcttactggagggagatcttcggtggatgctctgaca
cccaaaatgcagaaggatacattggattcatttcgctctggaaaggtgaacttactattt
actacagatgttgctgaagagggtatccatgtcccagaatgctcttgtgtaatacgattt
gatttgccaaggacaacacgtagctatgtgcagtcacgtggacgagcacgccaggaagac
tctcagtacattctcatgattgaacgggggaacgtgaagcaaaatgatttgatatctgca
attgtgagaagtgagacttcaatggttaagattgcttcaagcagagagtctggaaatctg
tcgcctggttttgttcccaatgaagaaataaacgaataccatgtaggcacaacaggagcg
aaagtaactgctgattcaagcatcagtattgtctaccgatactgtgagaagcttccgcag
gataagtgctactccccaaaacctacatttgagttcactcatcatgatgatggatatgtg
tgtacattagcattaccaccaagtgctgtgcttcaaattctggtgggcccaaaagcaaga
aacatgcacaaagcaaaacagctcgtttgccttgatgcatgtaagaagttgcatgagcta
ggagcacttgatgaccacctttgtctatctgttgaagatccagttccagaaattgtaagc
aaaaataagggtactggtataggtacaaccaaacggaaggagctacatggtacaacaaga
attcatgcttggtctggcaattgggtgtcaaagaaaactgcactcaagcttcaaagctac
aaaatgaattttgtttgtgaccaagctggtcagatttactctgaatttgttctgttaatt
gatgcaactttaccggatgaagtcgctactttggagattgacctatatttgcacgacaag
atggtcaaaacttcagtttcttcttgtggacttcttgagttggatgctcaacagatggaa
caagcaaagttgtttcaagggcttctcttcaatggtttgtttggaaagctgtttactaga
tcaaaagtacctaatgctccgagggaattcattcttaataaagaggatacatttgtgtgg
aacactgcgagtgtatatttgcttttaccaacaaatccttcttttgactccaacgtttgt
attaattggagtgtcattgatgcggcagctacggcagttaaacttatgagaaggatttat
tctgagaataaaagagaattacttggaatatttgattctgaccaaaatgttggagattta
attcatttagctaacaagtcgtgtaaggctaacagcctcaaagatatggtagttctagca
gttcacactgggaagatatatactgctcttgatattactgaattatctggcgatagcgct
tttgatggtgcatctgataagaaagaatgtaaattccggacattcgcagaatatttcaaa
aagaagtatggcatagtacttcgccacccctcacagccactactagttttgaagcctagt
cataatcctcacaaccttctttcctcgaagttcagggatgaaggtaatgttgtggagaat
atgagtaatggcacaccagttgtaaataaaacaagcaaccgtgtccacatgcctcctgag
ttgctgattccccttgatttacctgtggaaattttgagatcattctatttgtttccggct
ttgatgtatcggattgagtcattaacgttagctagtcaactaagaagtgaaattggatac
agcgattctaatatatcaagtttcctgattctggaagctattacaacgcttaggtgctct
gaggatttctctatggagcgtctagaattattgggagactctgtattgaagtatgcagtg
agttgtcatcttttcctgaaatttcctaataaggatgaggggcagctatcatccataagg
tgccatatgatttgtaatgccacactttataagcttggaattgaacgcaatgtacagggt
tacgtacgtgatgctgcatttgatcctcgtcgatggctagcaccaggacagctctctatt
cgtccatctccttgtgaatgccctgtaaaatctgaggttgtaactgacgatattcatatc
attgatgacaaggctattgttctaggcaaggcgtgtgacaagggacacagatggatgtgt
tccaaaaccattgctgattgtgttgaggctattattggggcatattatgcagggggtggt
ttaagagcagccatggcagttctcaaatggttgggcatcggggctgaaattgaagaagac
ttgattgtgcaggccatattgagtgcttctgtgcagacttatcttccaaaagacaatgta
tttgaaatgcttgaagcaaaactaggctattctttctcggtgaaaggtcttttggtagag
gctctgactcacccatcacagcaggagttaggtgcaaaatactgctacgagcgcctagag
ttcctcggtgatgcggtcttagacattctgttaacaagatatcttttcaatagtcataaa
gacactaatgagggggagttgacagacttacgttctgcatcagtcaataatgaaaacttt
gcacaagttgcagtaaagcacaacttccatcactttctccagcattcttctgggcttctg
ttagaccaaattactgaatatgtgaataggttggaaggttcatccatggacaaagttgaa
ctgttatcagatggactcccaaaagggcctaaagtccttggtgatattgtagaaagtatt
gcaggtgcaattcttttagacaccaaacttgatttggatgtagtctggggtatttttgaa
ccccttctttccccaattgtcacacctgagaatctggagttacctccatacagagagctt
atcgaatggtgtggcaaacatgggtattttgtaggaattaactgtagagatcaaggagac
acagtagtggctactcttgatgtacagctcaaagaggtgcttcttgtgaggcaaggtttt
agcaagaaaagaaaagatgcgaaagcgcatgcatcttccttactgctcaaagatctcgag
gaaaaaggactaataatcccaaagaatgcaagcaagacagaacaatttgaaaagcattgt
ggcagcactaatcccttcaacaatttgcatgtcgatgcaatggatacacagactccaaaa
ccaaccaaggaaaaaaacgcagctgattcaaggaacatttctgatcccctgcttggtaaa
ccattgcacgtgattgtgaaaacgagtaaaggaggaccacgcattgcattatatgagttg
tgtaaaaagttgcaatggccaatgcctacaatggaatctgagaaagtacaaccaagcttt
agcagcgtgtgctcctcccctggtggttcctctcagaaagctaccccccaagcgttcgct
ttcgcttcaaccattacattgcatataccaaatgctgatgtgatcagcctcacaggagat
ggccgtgcagataagaagagctcacaggattctgctgccctgttcttgctctatgagctt
cagcggcgaggtactttgcaactccaggaggtgtga
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