Oryza sativa japonica (Japanese rice) (RAPDB): Os01t0164500-01
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Entry
Os01t0164500-01 CDS
T02163
Symbol
Os01g0164500
Name
(RAP-DB) Similar to ATP-dependent RNA helicase-like protein.
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dosa03009
]
Os01t0164500-01 (Os01g0164500)
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Os01t0164500-01 (Os01g0164500)
Ribosome biogenesis [BR:
dosa03009
]
Eukaryotic type
Pre-60S particles
Helicases
Os01t0164500-01 (Os01g0164500)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
ATXN-1_C
Cwf_Cwc_15
Motif
Other DBs
RAP-DB:
Os01t0164500-01
LinkDB
All DBs
Position
chr01:complement(join(3331635..3331922,3331271..3331507,3330913..3331173,3330661..3330740,3330450..3330555,3330240..3330353,3330061..3330159,3329820..3329909,3329438..3329688,3328727..3329144))
AA seq
647 aa
AA seq
DB search
MSSSSSSLAAAAARKRALTEQRFSELSPALSPEVVKALKGGGFRRCTPVQAAAIPLLLSH
KDVAVDAATGSGKTLAFVVPVVEILRRRPSPPKPHEVLGIIISPTRELSSQIYNVAQPFF
ATLKGVSSMLLVGGFDIKAELKKLEEEGANILVGTPGKLFDVMERLDTLNYKNLEILILD
EADRLLDLGFQKQITSIISKLPKLRRTGLFSATQTEAVKELAKAGLRNPVRVEVKTEVKP
TGKDGAQQELGPSKTPLGLRLEYMICEASNKSSQLVDFLVQNNGKKIMVYFATCACVDYW
AIVLPLLDSLKGSPIIPYHGKMKQGPREKALASFSALSSGILVCTDVAARGLDIPHVDLI
VQYDPPQDPNVFIHRAGRTARYDQEGDAIVFLLPKEDTYVEFLKRRGVPLTERECSTNAV
DIVPQIRSAALEDRNVMEKGLTAFVSFVRAYKEHHCSYIFSWKDLEIGRLGMEYGLLQIP
SMPEVKHHSLSLEGFTPVKDVDVTKIKYKDKAREKQRQKTLKRKAEELALRPEIEKRRKA
PEKPEKPKRKKTGKQRQAVQTKEDMDELANEYRLLKKLKRGVIDEDEYEKLTGFGESDDD
DSSDGGDSDLDERKERGNKVLKKIKQKGKAKGSRRFEGRSKQKTRRR
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcttcctcctcctcgttggcggcggcggcggcgcggaagcgcgcgctgacggag
cagaggttctcggagctgtcgcccgcgctgtccccggaggtggtgaaggccctgaagggc
ggcgggttccggcggtgcacgccggtgcaggcggcggccatcccgctgctgctttcgcac
aaggacgtggccgtcgacgccgccaccggctccggcaagacgctcgccttcgtcgtcccc
gtcgtcgagatcctccgccgccgcccctcgcctcccaagccccacgaggttcttggaatc
atcatctccccgacgagagagctgtcttcgcagatatacaatgtggctcagcccttcttc
gcgacgctgaagggcgtctcatccatgctactggttggtgggttcgacatcaaggcggag
ctaaagaaactggaagaagagggtgcaaacatactggtcggcaccccggggaagctgttc
gacgtaatggagcgcttagacactctgaactacaagaatcttgagattttgatcctggat
gaagctgataggctgttggatttaggattccagaagcagattacgtcgattatttcgaag
ttgccaaagctgaggagaacagggcttttttcggcaactcagacggaggctgttaaggag
ctggcgaaagcagggttgaggaatcctgtgagggttgaagttaagacagaggtgaagccc
acaggtaaagatggtgctcaacaagagcttggtccatccaaaacaccgttgggtcttcga
ttggagtatatgatatgtgaagcatcaaataagtcatcgcaacttgttgatttccttgtg
cagaacaatggaaagaaaataatggtgtacttcgcaacatgtgcttgtgtagattactgg
gctattgttctcccgctgttggactcacttaaaggttctccaataattccttatcatggg
aagatgaagcagggccctcgtgagaaagctttggcatcattttcagctctctcaagtggt
attctagtttgcactgatgttgcagcaaggggtcttgacataccacatgttgatctgatt
gtgcagtatgatccacctcaagatcccaatgtgttcatacatagagctggccgtactgca
cgttatgatcaagaaggagatgctattgtattcctcttaccgaaggaagatacttatgtt
gagttcttgaagaggagaggtgtacccctcactgaaagggagtgttccacaaatgctgta
gatattgtaccacagatcagaagtgctgcattggaagaccgaaatgtcatggagaaaggg
cttacagcttttgtttcgtttgttcgggcatacaaggagcaccactgttcttacattttc
agttggaaagaccttgaaattggaaggttgggtatggagtacggcttactccaaattcca
tctatgccagaagttaagcaccattctctttcattggaagggtttactcctgttaaagat
gtcgatgttacaaaaatcaagtacaaggataaagctcgagaaaaacaacggcagaagaca
ttgaaaaggaaagcagaagaactagctctaaggccagagatagagaagaggaggaaagcc
ccggagaagcctgaaaagccaaagcggaagaagacaggtaaacagcgtcaagcagtccaa
accaaggaggacatggatgagctcgcgaatgagtaccggctcctgaagaagctgaagcgg
ggggtgatcgacgaggacgagtacgagaagctcaccggattcggggaatctgacgatgac
gattcctcggatggcggcgattctgacctggacgagagaaaggagaggggcaacaaggtg
ctcaagaaaatcaagcagaaagggaaggcaaaagggtctaggagatttgaagggaggagc
aaacagaagactaggagaagatga
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integrated database retrieval system
