Oryza sativa japonica (Japanese rice) (RAPDB): Os02g0137400
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Entry
Os02g0137400 CDS
T02163
Name
(GenBank) WD40-like domain containing protein
KO
K12830
splicing factor 3B subunit 3
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os02g0137400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dosa03021
]
Os02g0137400
03041 Spliceosome [BR:
dosa03041
]
Os02g0137400
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os02g0137400
Transcription machinery [BR:
dosa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
Os02g0137400
Spliceosome [BR:
dosa03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
Os02g0137400
Complex B
Os02g0137400
Complex C
U2 SnRNP specific factors
Os02g0137400
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
Os02g0137400
TFTC complex
Os02g0137400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-ProteinID:
BAF07743
RAP-DB:
Os02g0137400
UniProt:
Q0E445
LinkDB
All DBs
Position
2
Genome browser
AA seq
845 aa
AA seq
DB search
METDEGFQPVFFQPRALKNLYRIDEIESLMPIMDMRVANLFDEETPQVFTACGRGPRSTL
RILRPGLAISEMARSMLPAEPIAVWTVKKNINDMFDAYIVVSFANVTLVLSIGETIEEVS
DSQFLDTTHSLAVSLLGEDSLMQVHPNGIRHIREDGRVNEWRTPGKKTITKVGSNRLQVV
IALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLAIAPVPEGRQRSRFLAVGSFDNTIRI
LSVDPDDCLQPLSVQSVSSAPESLMFLEVQASVGGEDGADHPANLFLNAGLQNGVLFRTN
VDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQAMLCLSSRPWLGYIHQGHFLLTPLSCDT
LESAASFSSDQCSEGVVAVAGDALRIFTIEHLGETFNETAIPLRYTPRKFVILPKKKYLA
VIESDKGALSAEEREAAKKECLEAAGVTENGNANNGDQMENGDGQEDGAEDRNTLPDEQY
GYPKAESERWVSCIRILDPKSRDTTCLLELQDNEAAVSICTVNFHDKEHGTLLAVGTAKG
LQFWPKRNLSAGFIHIYKFVDEGRSLELLHKTQVEEVPLALCQFQGRLLAGVGSVLRLYD
LGKRKLLRKCENKLFPRTIVSIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFADDSVPR
WLTAANHIDFDTMAGADKFGNIYFARLPQDLSDEIEEDPTGGKIKWEQGKLNGAPNKVEE
IVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSVGALLAFTSREDVDFFSHLEMHLRQE
HPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPSLPADMQRKIADELDRTPGEILKKLEDI
RNKII
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggagacagatgaggggttccagcccgtattctttcagccaagagcactcaagaacctg
taccggatcgatgaaattgaaagtctcatgccaatcatggacatgcgtgttgcaaatcta
tttgatgaggaaacaccacaggtattcacagcctgcggccgtggtcctcggtccaccttg
cgcatcctgaggcctgggcttgccattagtgagatggctcgatcgatgttgccggctgag
cctattgctgtctggactgtaaagaagaatatcaatgacatgtttgatgcctacattgtc
gtgtcctttgccaatgttacacttgtgctctccatcggtgagactattgaggaagtcagc
gacagccagtttctggataccactcactccctggcagtttctctccttggcgaggactct
ctcatgcaggtccacccgaacggcatcaggcacatcagggaagatggccgtgtgaatgag
tggaggacacctgggaagaaaactatcactaaggttggatcaaaccggctccaggtggta
atcgccctcagtggtggagagcttatctactttgagatggacatgacaggtcagcttatg
gaagtcgagaagcaggacatgtctggtgatgttgcatgcctggccattgcgccagttcca
gaggggagacagaggtcccgattccttgcagttggttcctttgataacaccatccgaata
ctctccgtggaccctgatgactgcttgcagcctctgagtgtccaaagtgtctcttcagcc
ccagagtccctcatgtttctagaagttcaggcatcagttggcggtgaggacggtgcggac
catccagccaaccttttcctcaatgctggcctgcaaaatggtgtcctgttccgcaccaat
gttgacatggtcactggtcagttatctgacacacgatctcggttccttggcctgagacct
ccaaaactgtttccgtgcatagttagccaccggcaagcaatgctttgcctgtccagccgt
ccctggcttggctacatacatcaaggtcacttcctattgactccactgtcctgtgataca
cttgaatctgctgcatccttctcttctgatcagtgctcagaaggtgttgttgccgttgct
ggtgatgccctacgaattttcaccattgaacacctgggggagactttcaatgaaacagcc
atccctctgcgctacaccccaagaaaatttgtgattcttccaaaaaagaaataccttgct
gtcattgagagtgataaaggtgcgctcagcgcagaagagcgagaagcggctaagaaggag
tgccttgaggctgctggtgttacagaaaatggtaatgcaaataatggggatcagatggag
aatggtgatggtcaagaagatggtgctgaggacagaaacacacttccagatgaacagtat
ggttatccaaaggcggaatcagaaaggtgggtttcttgcatcaggattcttgatccaaag
agcagagacacgacttgtctgcttgaattgcaagacaatgaagcagctgttagcatttgc
actgtgaactttcatgataaggagcatggtactctcttggctgttggtactgccaaggga
ttgcaattctggccaaagaggaacctttcagctgggttcatccacatatacaagtttgta
gatgaagggaggtcacttgaactgcttcacaagacacaggtggaggaagtacctcttgcc
ttgtgccagttccaaggacggttgcttgctggtgttggttcagtcctcaggttatatgat
cttgggaagaggaagttgctcaggaagtgtgaaaacaaacttttcccaaggacgatagtg
tctatccatacttaccgagataggatctatgttggtgatatgcaagagtcatttcattat
tgcaagtacagaagggatgaaaaccaactgtacatcttcgctgatgatagtgttcccagg
tggctcacagcagcaaatcacatagattttgatactatggcaggggcagataagtttggg
aacatatattttgctcgccttcctcaggatctctcagatgagattgaagaagacccaact
ggggggaagattaaatgggagcaagggaagttgaatggggccccaaacaaagtagaggag
attgttcagtttcatgttggtgatgttgtcacatgtttgcagaaagcctctttaataccg
ggaggcggcgaatgtcttatttatgggactgtgatgggcagtgttggggcactgcttgca
ttcacctccagggaagatgttgacttcttttctcacttggagatgcatctccgccaggag
catccaccattatgtggaagagatcacatggcctacagatctgcttattttccagtgaag
gatgtgattgatggtgacctctgtgagcagtttccatccctcccagctgatatgcaaagg
aagattgccgatgaactcgacagaactcctggtgaaatcctgaagaagctggaggacatt
aggaacaaaattatctga
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