Oryza sativa japonica (Japanese rice) (RAPDB): Os02g0772000
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Entry
Os02g0772000 CDS
T02163
Name
(GenBank) NGN domain containing protein
KO
K15172
transcription elongation factor SPT5
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
Os02g0772000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dosa03021
]
Os02g0772000
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os02g0772000
Transcription machinery [BR:
dosa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
Os02g0772000
RNA polymerase I system
Os02g0772000
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
Os02g0772000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
Spt5-NGN
KOW7_SPT5
KOW5_SPT5
KOW2_Spt5
KOW
Spt5_N
GPKOW_C
KOWx_SPT5
Motif
Other DBs
NCBI-ProteinID:
BAH91888
RAP-DB:
Os02g0772000
UniProt:
C7IY85
LinkDB
All DBs
Position
2
Genome browser
AA seq
954 aa
AA seq
DB search
MSRGSREEEDEEEVYDSEEEEEEEGEVEERGGKRSRGGGGGGKWSGVESFIDDAASEDED
EEEEEDDDEDYVGGGGGRARKRKRASILIDDMAQVDDEEEEEEDGEFEDGFIDDTRADDP
DQDVGRSSRRHPSSMLDEEEDVDALVKLIHDRYIIPSSHFVDDDDGVTEVEQQALLPSVK
DPKLWMVKCAIGHERETAICLMQKSIDTPDLQIKSVLALDHLKNYIYVEAYKEAHVKEAC
KGVRNIFASRKVTLVPIREVADVLSVQSKSTDISINTWVRMKLGAYKGDLAKVVDVDDVH
QKVTVKLIPRIDLQALANKFDGLKVVKEKKSFVPPPKLFSANEARRNRDSGEYYEMVDGL
KFKDGFLHKTFSIKSISAHNIQPSFDELEKFREPDNDINEDAASLSTLFTNRKKGHFMKG
DSVIVIKGDLKNLEGYVEKAEDATVHIRSKLPGLLNTLVFNEGDLCKCFNPGDHVKVVSG
VQEGATGLVVKVEGHVLIILSDTTKEHIRVFADHVVESSEVTTGLTRIGDYELHDLVLLG
ESKGLWNIYTEEYFLFMIVTTLNIQALSVQAHNHASLLGDQLGMGTVDPRFGAFRSSARI
LQSPGRLPPKAPHTNYGRRFGGRDHGGKGHDTLVNRCIKIKSGPYKGYRGRVKEMTGALV
RVELDSLMKVVAVKREDIADTATVATPFGESHNSWGNETPVHPSRTPLRPFQTPLRDPGA
TPVPNGMRTPMPSRAWAPMSPPRNGWEDAVTWESSPTYQPGTPVPQPHEAPTPGSGWAVT
PGVSFGDASGKNPSSYATPTPSGQPMTPNPASYLPSTPGGQPMTLGYIEMDIMSPAIGEE
GGRNWLLPDVLVNVLREGYDTTCGVVKEVLPDGSCRVALGSSGSGDEITAFPNEFEVVKP
KKNDKLKIMSGSWRGLTGKLLGVDGSDGIVKVDGLETTDQTKILDTAILGKLAA
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgcggcagccgcgaggaggaggatgaagaggaggtgtacgactcggaggaagag
gaggaggaggagggggaggtggaggagaggggcggaaagcggtcacgcgggggcggcggc
ggcgggaagtggtccggcgtagagagcttcatcgacgacgcggccagtgaggatgaggat
gaggaggaggaggaggatgacgacgaggactacgtgggtggcggcggcggccgtgcccgc
aagaggaagagggcgtccatcctgatcgacgatatggctcaggtcgacgatgaagaggag
gaggaggaggatggcgagttcgaggacggctttattgatgatactcgagctgacgaccct
gaccaagatgtgggaagaagctctagacggcatccatcttctatgctggatgaagaggag
gacgtggatgcacttgtgaagctaatacacgacaggtatataattccgtcatcacatttt
gtggatgatgacgatggtgtgactgaggttgaacagcaagctcttctgccatcggtgaag
gatccaaagctttggatggtgaaatgtgcgattgggcatgaacgggagacagccatttgt
ttgatgcagaagtccattgatacgccagatctccagattaaatctgttcttgcattagat
cacctgaagaattacatttatgtggaagcatataaagaagcccatgtcaaagaggcttgc
aaaggtgtgcgcaatatcttcgcttcaagaaaagtaactctggtgcctataagagaggtg
gctgatgtactctctgttcagagcaagtctactgatatttcaattaacacatgggtccga
atgaagcttggtgcatataaaggggatcttgccaaggttgttgacgttgatgatgtgcat
caaaaggttactgtgaaactcattccaagaatagatttacaagccttggcaaacaaattt
gatggacttaaggttgtgaaggagaagaaatcatttgttccaccaccaaagttatttagc
gccaatgaggcaaggaggaatagagactctggggaatactatgaaatggttgatggttta
aaattcaaagatggtttcttgcacaaaacgttttcaataaagtcaataagcgcacacaat
attcagccatcatttgatgaactggagaaattcagggaacctgataatgacataaatgag
gatgcggccagcttgtccaccctatttacaaataggaaaaaagggcacttcatgaaaggt
gattctgttattgttattaaaggtgatcttaagaacttagagggctatgttgagaaagca
gaggatgccactgttcatatccgatcaaaattacctggtcttctgaacacacttgtcttc
aatgagggggatctctgcaaatgtttcaatcctggagaccatgtaaaagtggtgtctggt
gttcaagaaggtgcaacgggcttggtagttaaagttgaaggccatgttttgatcattttg
tcggacacaactaaagagcatatccgtgtgttcgctgatcatgttgtggagagttctgag
gtaaccactgggcttaccagaattggtgattatgaattgcatgatcttgtacttcttggg
gaaagcaagggtctgtggaacatatacacagaggagtactttttatttatgatcgtcacc
accttgaacattcaggctttatctgtgcaagcgcacaatcatgcctccttgttgggggat
caactgggtatgggtacagttgatccacgatttggtgcttttagatcttcagcaaggatt
ttgcaatctccaggaaggctcccccctaaagcacctcatactaattatggcagacggttt
ggaggcagagatcatggtggcaaagggcatgataccctggtgaatagatgtatcaagatt
aaatctggcccctacaaaggatatcgtggtcgtgttaaagaaatgacgggagcacttgta
cgcgtggagcttgattcacttatgaaggttgttgcagttaagagagaagatattgctgac
acagctactgttgcaactccattcggtgaatctcataattcatggggcaacgaaacacct
gtgcacccatctagaacgccactgcgtccttttcagactccattgcgggaccctggagca
acaccagttcctaatggaatgcgaactcctatgcctagtcgagcatgggcaccaatgagt
ccaccaaggaatggctgggaagatgctgtcacttgggaaagcagcccaacttaccaacca
ggaactccagttccccagccacacgaagcccccacccctgggtcaggatgggctgttaca
cctggagttagtttcggtgatgcctccggaaaaaatccaagctcatatgcaactccaaca
cctagtgggcaaccaatgaccccaaatcctgcatcatatctcccgagcacacctggtggt
cagcccatgactctgggttatattgaaatggatataatgtctcctgccataggtgaggag
ggcggtaggaactggcttttaccagatgttttggtcaatgtgctcagggaaggttatgat
accacctgcggtgtggttaaggaagtcctcccggatggatcttgccgcgtcgcacttggg
tcgtcaggcagcggggatgaaataactgcttttccaaacgagtttgaggttgtcaagcct
aagaagaacgacaagctaaagataatgtctgggtcttggcgtggactcacggggaaattg
ctgggagtcgacggatctgatggcattgtgaaggtggatggtctagagacgacggatcag
acgaaaattctagacacggcgattttgggcaagctagcagcctga
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