Oryza sativa japonica (Japanese rice) (RAPDB): Os02g0782200
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Entry
Os02g0782200 CDS
T02163
Name
(GenBank) NOT2/NOT3/NOT5 domain containing protein
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os02g0782200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os02g0782200
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Os02g0782200
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Os02g0782200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-ProteinID:
BAF10229
RAP-DB:
Os02g0782200
UniProt:
Q6K823
LinkDB
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Position
2
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AA seq
622 aa
AA seq
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MSGLLNSNLNNSASNLQDSTGRPFTGSFSGQSGSVPGGFHHSGLHNMHGSLNMPNMPGSF
SQRNAAMSGLPSSGVQQPGGSMPGRFASNNLPVGMSQIPHGHSGVGSRGLNVGGGPAFSS
SLNIGGTIQGLSSNLGAGGSRNSVPGMSVSPSLGNLGPRITGSVGNIVGGSNIGRNISSG
GLSVPSIASRMNLSGNVGSGGLNVQGSSRMMNGILQQGSPQMLNMMGSLYPTSGGSLSQN
QIQGGNNSLGSMGMLHDASDGAPFDMSDFPQLTGRPSSAGGPQGQYGSLRKQGVGVNTIV
QQNQEFSIQNEDFPALPGYKGNTTDYAMELHHKEQLHDNVPVMQAQQYPMSRSVGFNLGS
NYPPNRQQHQQGANSVQNAGPPNIGLRPLNSPNQTSSLGSYEQLIQQYQQPQAQNPFRLQ
QVSSATQSYRDQSLKSIQGGQTPSDPYGLMGLLGVIRMNDVDLSSLALGIDLTTLGLNLN
SPDNLYKTFGSPWSNEPAKGEPEFHTPACYSAEQPPPLQPIHFQKFQTPTLFYIFYSMPR
DEAQLCAASELYTRGWFYHKEVRVWLTRIPNVEPLVKTPHYERGSYGCFDPNNWETIRKD
NFVLHYDQIEKKPAIPSSQNVR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcctgctgaattcaaacctgaacaattctgcatcaaatcttcaagactcaact
ggaagaccgtttacagggtccttttctggtcaatctggatcagttccagggggtttccat
cactctggtttgcacaacatgcatggaagtttaaatatgccaaatatgcctggatcgttt
tctcagaggaatgctgccatgagtggccttccatcctctggggttcaacagcctggaggg
agcatgcctgggagatttgcttcaaacaaccttccagttggcatgtcccagatccctcat
ggtcattcaggagtcggtagtagaggattgaatgttggtggaggtccagcatttagtagt
agcctgaatattggtggtaccattcaaggcttatcctcaaacctgggtgctggtggtagt
cgtaattctgttcctgggatgtcagtatctccatctttgggaaatttgggtcctaggatc
actggttctgtaggaaatattgtgggtggaagtaacattggaaggaatataagctctggt
ggattatctgtgccaagcatagcatcacgcatgaatttgagtggcaatgttggcagtggc
ggtctgaatgtccaaggatccagcaggatgatgaatggcattcttcagcaaggatcacct
caaatgctgaacatgatggggagtttatatccaacatctggaggttctttatctcagaac
caaatacaaggaggaaataattcccttggttctatggggatgctgcatgatgccagtgac
ggtgctccatttgacatgagtgattttccccagctgactggtcgacctagttctgcgggt
ggtccacaaggacaatatggctccctacggaagcaaggagttggtgttaacaccattgtt
cagcaaaaccaggaattcagcattcaaaatgaagacttcccggctttacctggatacaaa
ggcaacactacagattatgctatggagttgcatcacaaggaacaacttcatgataatgta
cctgttatgcaagcgcaacaatatccgatgtcaagatcagttggctttaacttaggaagt
aactacccaccaaatcgtcagcaacaccagcaaggtgctaattcagttcagaatgctggt
cccccaaatatcggactaagaccactaaattctccaaatcaaacttctagtttgggatca
tatgagcaacttatccagcaataccagcaacctcaggctcaaaatcctttcagattgcag
caggtgtcttcagctacccagtcatatagggatcagagtctaaagtccatccaggggggc
caaacaccatctgatccatatggcttgatgggattgctaggagttatcaggatgaatgat
gttgacttatcatctcttgctttaggaatagatttgacaacattgggtttaaacttgaac
tcaccagacaatctgtacaagacatttggctctccatggtcaaacgagccagcaaaagga
gaacctgagtttcatactccagcttgctactccgctgagcaacctccaccactacaacct
atacattttcagaaattccagacgccaacactgttttacatcttctatagcatgccaagg
gatgaagctcagctatgtgctgctagtgagctgtatactcgaggatggttctaccataaa
gaagtgcgtgtgtggctcaccagaattccaaatgttgagcctctggtcaaaacacctcat
tatgaacgaggatcttatggttgctttgatccaaacaactgggagacaatccgcaaggac
aactttgttctccattatgatcaaatagagaagaagccagctatcccttcatcccaaaac
gttaggtga
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