Oryza sativa japonica (Japanese rice) (RAPDB): Os02g0815800
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Entry
Os02g0815800 CDS
T02163
Name
(GenBank) Nucleic acid-binding, OB-fold domain containing protein
KO
K07573
exosome complex component CSL4
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os02g0815800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os02g0815800
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Os02g0815800
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Os02g0815800
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Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
CHASE5
RRP40_S1
ECR1_N_2
Motif
Other DBs
NCBI-ProteinID:
BAF10420
RAP-DB:
Os02g0815800
UniProt:
A0A0P0VR39
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All DBs
Position
2
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AA seq
197 aa
AA seq
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MAATAMDHDGGEVVTPGELLGNSSLLAGLGAYADGRCVRASITGHRRLVPPPPGSTDQRS
TVEVVGHKAHGAVPQPGSVVIARVTKVMARMASADIMCVDSKAVKEKFTGMIRQQDVRAT
EIDKVDMFQSYRPGDIVRALVLSLGDARAYYLSTAQNELGVVSAQSITGGTLVPISWTEM
QCELTGQIEQRKVAKVE
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacggcgatggaccacgacggcggcgaggtggtcacccctggggagctcctc
ggcaactcgtccctcctagcggggctcggcgcctacgccgacggccgctgcgtgcgcgcg
tccatcactggccatcgccgcctcgtgccgcctcctcccggctccaccgatcagaggtcc
acggtggaggtggtcgggcacaaggcccatggagctgtgccgcagccgggaagcgtcgtc
attgcgcgtgtgacgaaggttatggctaggatggcttctgcagatataatgtgtgttgac
tcaaaggctgtcaaggaaaagttcactggcatgataaggcagcaagatgttcgtgcaact
gaaatcgacaaggtggatatgtttcagtcataccgacctggtgatattgtcagagccctg
gttctctctcttggtgatgcaagggcatattacctttccactgcccagaatgaactcgga
gttgtttctgcacaaagtataactggtggtacactagtcccgatcagttggactgagatg
caatgcgaattgacgggccaaatagagcaaaggaaagttgcaaaagtggaatag
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