KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os03g0102200
Entry
Os03g0102200      CDS       T02163                                 
Name
(GenBank) Similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (EC 2.7.7.6) (RPB9) (RPB14.5)
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03020  RNA polymerase
dosa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Os03g0102200
  09124 Replication and repair
   03420 Nucleotide excision repair
    Os03g0102200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dosa03021]
    Os03g0102200
   03400 DNA repair and recombination proteins [BR:dosa03400]
    Os03g0102200
Transcription machinery [BR:dosa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     Os03g0102200
DNA repair and recombination proteins [BR:dosa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      Os03g0102200
SSDB
Motif
Pfam: Zn_ribbon_TFIIS Zn_ribbon_RPB9 Lep_receptor_Ig CpXC Zn_ribbon_4 Zn_ribbon_RPAB4
Other DBs
NCBI-ProteinID: BAF10574
RAP-DB: Os03g0102200
UniProt: A0A8J8YLZ7
LinkDB
Position
3
AA seq 114 aa
MSTMKFCRECNNILYPKEEKDRRLLLFACRNCEHQEVSESKCVYRNEVAHAAGERTQVLQ
DVASDPTLPRTKTVRCAACGHGEAVFFQATARGEEGMTLFFVCCNLTCAHRWRE
NT seq 345 nt   +upstreamnt  +downstreamnt
atgagcaccatgaagttttgccgcgagtgcaacaacatcctgtaccctaaggaggagaag
gaccggcggctgctgctgttcgcgtgccggaactgcgagcaccaggaggtatcggagagc
aagtgcgtgtatcggaacgaggtggcgcacgcggccggggagcggacgcaggtgctgcag
gacgtggcgtcggacccgacactgccgcgcacaaagacggtgaggtgcgccgcctgcggg
cacggcgaggccgtcttcttccaggccaccgcccgcggcgaggagggcatgaccctcttc
ttcgtctgctgcaacctcacctgcgcccaccgatggagggaatga

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