Oryza sativa japonica (Japanese rice) (RAPDB): Os03g0102300
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Entry
Os03g0102300 CDS
T02163
Name
(GenBank) CCR4-Not complex component, Not1 family protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os03g0102300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os03g0102300
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Os03g0102300
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Os03g0102300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_TTP_bind
CNOT1_CAF1_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-ProteinID:
BAF10575
RAP-DB:
Os03g0102300
UniProt:
Q0DW13
LinkDB
All DBs
Position
3
Genome browser
AA seq
1729 aa
AA seq
DB search
MISEISATEVRLLLLQAAADSNLDSVRRRLCQLVDSGLDGCILLLQVCLDQVLLKPHQLD
KSKHDLLSAVFRYCMDKTYFTTCFCEALGPMPATHGDGFLKTLSNVLELSPAERVGIGLA
LSDSEDSGLKLKGQQFSIAQIEGLCLNLLQSPSNDQIHDIVIFLHQTDGLSKHMDTFNTI
ISLFKTKETPFFAPTPFNKCDIQSRHLDMCFGSMDYDSELLLSEIEKEITMADIVTELGY
GCTVDTTHCKEILSIFEPLDDVAVSKLVGAVIGTHNVLVEAHNTYAMFVSAISNMNDSPQ
LTTWNTDVLVDSINELAPSTNWVHVMENLDHEGFNVPDEAAFCLLMSIYAHPCKEPFPLH
AVCGSLWTNTEGQISFLKHAVSVPTDTFTFSHCSRKLAFPDLACPIQDNHAWFCLDLMVV
LCQLAEVGHTVSVQSMLEYPLQHCPELLIVGLGHVNTAYNLLQYEVQSRVFPAILKDATK
SNVVNYLWQINPSLTLRGFVDAHSDPDCLLRIVDVCRDLKILSAVLDSTPYAFSIKLAVA
ASRIDHSHLEKWLIAKLRVCKDDFLQILQYQSGHLLSNQKLDELRKSYISYELRNHDSVV
RGIPTSDNVEIEADAYFHQMFSGQISIAAIVQMLSRFKNSPEKREQLIFKCMISNMFEEY
KFLPKYPDKQLKLSALLFGSLIKHRLVTHLELGIALHAVLDALHKSVDSKMFMFGTTALE
QFMDRLIEWPDYCNHILQISHLCGAHTEMVSAIERALARISSSQNELSVNISVSSEQHVT
GLAPIEPIERGEWARPRLVVVYGSSFFALAADFHDMTSITHPHHHSPSHRLLINHLHYLP
LINCPVCHLLCMLLFFHILKVPAQAKAKECIEVLPECYYPWFAQSMVMKRASIEPKFHDL
YLKFFVKVNSRFLNKEVLKATYENCKILLRSDLIKSSSEERSLLKNLGSWLGKFTIGRNQ
ALLAKEIDPKVLIVEAYEKGLMIAVIPFTSKVLFKNLDVDLKDVNPTSLLKDRVCEVEGN
PDFSNKDVAASQTQISSGISRSTNHVELQSVISSTSHAYATPHLPSNSMVEDDNVAFMMP
KHVSSHTLTQVSPSETALASQSPFSLTQLVKLIPHDEIRCKISSKLGSLGRQLQYSKIMD
TALDKAIKEILCPVVEKSVGTAIQNTKKLILKDYALESDNNTIKSSVHSIARTIAGNLAY
ANCKEPLCVALTDHLQSQIQTLTSNNKTIKQLIDVLINDNLDLGCRIIKSVAMCKAIEMI
DEEITESFPLQKKQREAAGSAYCDAFTHAQGRFAHEPEALHPKHEHLSVAQQVTMFMYGR
AIANMLTLHVLVSLELAVKHSLVPNQIVATGGVSQKSSQQLKISYFPIDSFSKLVAMVLK
YSSAETGPNKCSLLPKILLVAVRIIQRDSEEKKASFNPRPYFRLFISLLYDLISSDLHSD
GANFQVLIAFANAFHALQPLRIPSWSFCDMIPSSCIQMRNVILDAHPQDMRVVDPASPNL
KIDLLPEISMAPQIMSDVEGALKSKLMKTEVDEYFKKSEGSLFLSDLKQKLLLPQNETSV
AGTRYNVPLINSLVLYVGIQGLQQQQTESSASGPAIHTAHMDIFRTLMADLDTEGRYLVL
NAIANQLRYPNIHTHCFYFIILHLFSEATQEIIQDQIMRVILERLVVRRPHPWGLQMTLV
ELIKNPRYKLWSRPFIRCGPQIDKVLIEFVDMLDDPRLTSLYSSFRSIN
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atgatctccgaaatctccgcgacggaggtgcgcctcctcctgctccaagccgccgccgat
tctaacctcgattccgttcgccgccgcctctgccagttagtcgactccggtctggatgga
tgcattttgcttctccaagtttgtttggatcaagtgctcctcaaacctcaccagctggac
aaatctaaacatgatcttttatctgccgttttcagatactgtatggataaaacatacttc
accacctgtttttgtgaggctcttggaccgatgcctgccacccatggcgatggcttcctc
aaaaccttatcaaatgtcctggaactctcaccagctgagagagttggcattggacttgcc
ctgtcagattctgaggattcaggcctcaagctcaaagggcaacagttttcaattgctcaa
attgaggggttgtgtttaaatcttcttcaatcgccatcaaatgaccaaattcacgacatt
gtcatctttcttcaccagactgatgggctgtcaaagcatatggatacttttaataccatt
atatctctattcaaaaccaaagagacaccgttttttgctcctaccccatttaacaagtgc
gatattcagtcaaggcatctggacatgtgctttggcagcatggattacgattctgagttg
cttctgtctgaaattgagaaagaaattaccatggcagacatcgtaactgagttgggttat
ggatgcacagttgataccactcattgtaaggaaattctttccatattcgagcctcttgat
gatgtagcagtatcaaagttggttggggcagttattggcactcataatgtccttgtggag
gcccacaatacatatgctatgtttgtatcggctattagcaacatgaatgattcacctcaa
ttgactacatggaacactgacgttcttgtggattcgatcaatgaacttgcccctagcact
aactgggtgcatgtaatggaaaatcttgatcatgagggtttcaatgttcctgatgaagca
gccttttgtttgctgatgtctatatatgcccatccttgcaaggagccttttccacttcat
gctgtttgtgggtcattgtggacgaatacagagggtcaaatttcattcttaaagcatgca
gtttccgttcctactgatacatttacattttcgcattgttcgaggaagctggcatttccg
gacttggcctgtcctattcaagacaatcatgcttggttctgccttgaccttatggtggtt
ttatgccaacttgctgaagttggacacaccgtgtcagtacaatcaatgctggagtatcct
ctacaacattgtcctgaactcttaattgttggtcttggacacgttaatactgcgtataat
ctcctccaatatgaagtgcagtctcgtgtatttcctgccatactgaaggatgctacaaaa
agcaatgtggtgaactatctctggcagattaacccatccctcactcttcgaggatttgtt
gatgctcattctgatccagattgtcttctgaggattgttgatgtgtgtcgagacctgaag
atcctatctgctgtgcttgattctaccccttatgcattcagcattaaactggctgttgct
gcctctaggatagaccatagccatcttgagaaatggttgattgcaaagttacgtgtctgc
aaagacgattttcttcagattcttcagtatcagtcagggcatctcttgtccaatcaaaaa
ttggatgaactaagaaaatcatatatttcttatgagttgagaaatcatgattctgttgta
agggggatccctacttcagataatgttgaaatagaggcagatgcttattttcaccagatg
ttttctggacagataagcattgctgcaattgtacagatgctatctcgcttcaaaaattct
ccagaaaaaagggagcaattgatttttaagtgtatgatatcaaatatgtttgaagaatac
aagttcctcccgaagtatcctgataagcagcttaaactgtcagctcttttgtttggatct
cttattaagcatcgacttgtgacccaccttgagctcggaattgctctacatgctgttctt
gatgccttgcacaaatctgttgattcaaagatgtttatgtttggcacaacagcattggaa
cagtttatggaccgtcttatagagtggccagactactgcaatcatatattgcagatttcc
catctttgtggggcacacactgaaatggtctcagcaattgagagagcccttgctaggatc
tcatcgagccagaatgagctcagcgttaacatctcagtctcttctgagcagcatgtcact
ggtttggcaccgattgaaccaatagagaggggtgaatgggcgaggccgaggctagttgtg
gtctacgggtcctcgttctttgctcttgcagctgatttccatgatatgacatcaatcaca
catccacaccaccattcaccgagccatcggcttctgatcaaccatcttcattaccttccc
ctcatcaattgtccagtgtgccatctactatgcatgctactgttttttcacatcctcaaa
gttcctgctcaggctaaggcaaaagaatgtattgaggtactcccagaatgttattatcct
tggtttgcacaatccatggtcatgaaaagggcaagcattgaaccaaaatttcatgacttg
tatttgaagttctttgtcaaagtgaactcaagattcttaaacaaagaagtactgaaggct
acatatgagaactgcaagatattgttaagatcggatcttatcaaatctagttctgaggaa
cgctccttgctaaaaaatctgggaagctggctaggaaaattcaccatcgggaggaaccag
gcattactagctaaggaaattgacccaaaagttcttattgtagaggcatatgagaaagga
ctgatgatagcagtcattccattcacttcaaaggttctgtttaagaaccttgatgtggat
ctgaaagatgtaaacccaacttccctccttaaggatagagtatgtgaagttgagggaaat
ccagatttttcaaacaaagatgttgctgcatctcaaacccaaatctcttcgggcatcagt
cgctcaacaaaccatgtggaactgcagtcagttatcagtagcacttcccatgcttatgca
actcctcatcttccttcaaatagcatggtagaagatgacaatgttgctttcatgatgcct
aagcatgtttcctcgcatactttgacccaggtttcaccatcagaaacagcattggcatca
caatctccattttctcttactcagcttgtgaaattgataccacatgatgagatacgctgc
aaaataagttcgaaacttggctctcttggtcgacaattgcaatacagcaaaatcatggac
acagctttggacaaggctattaaagagatattgtgccctgttgttgaaaaaagtgtgggc
acagcaatccaaaatacaaaaaaacttattctgaaggattatgcactggagtcagataac
aataccataaaatcttctgtacattcaatagccaggacaatagctggaaatctagcctat
gctaattgcaaggaacctctttgtgttgcactaacagatcatcttcaaagtcagattcag
acgctcactagtaacaacaaaactatcaagcaactaatcgatgttctaatcaatgataac
ctggatcttggctgcagaattattaagtctgttgcaatgtgcaaggctattgaaatgatt
gacgaagaaataacagagtcttttccactacaaaagaaacaaagggaggcagctggctct
gcatactgtgatgcttttacccatgctcagggtcgatttgcacatgaacctgaagcactg
catcctaaacatgagcatctatctgttgcccaacaagtgactatgttcatgtatggcaga
gccatagccaacatgttgacgcttcatgttttggtcagtctggaacttgctgttaaacac
tctctagtccccaatcagattgttgctactggtggagtgtctcagaagtcatcacaacaa
ctcaaaatttcatatttcccaattgattctttttcgaagcttgtagctatggtgctcaag
tactcatctgctgaaacaggaccaaataaatgcagccttcttcccaagattttgttagtg
gcagttaggatcattcagagagattctgaagagaagaaagcatcattcaatccccggcca
tactttcggctttttataagtttgctatatgatcttatttcttctgacctccatagtgat
ggtgctaatttccaggttttgattgcatttgcaaatgcattccatgcactgcaacccttg
agaattccttcctggagtttctgtgacatgattccttccagttgcattcaaatgcgcaat
gtcattcttgatgctcatccacaagacatgagagtggtagatccagctagtcctaatttg
aagattgatctgttaccggaaatttcaatggctccacaaatcatgtcggatgttgagggt
gctctgaaatcaaagctgatgaagactgaggttgatgagtacttcaagaaatcagaaggc
tctttgtttcttagtgatctgaagcaaaagttattgctgccacaaaatgaaactagtgtt
gccgggacacgctacaatgttcctctcattaattcgcttgttctctatgtcggtatccaa
ggtttgcaacagcaacaaacggagtctagtgcatctggtccagcaatccatactgcccac
atggatattttcagaactcttatggcagacttggacacagagggccggtaccttgttttg
aatgcaatagctaaccagctgcgttaccctaatatccatacacactgcttctacttcatc
atcctgcatctgttttcagaagctacccaggaaattatccaggatcagataatgagggtt
atcttggaacgtctagtagtgagacgtcctcatccttggggcttacaaatgactttggtt
gaactgattaagaatccacgttacaagctgtggagccgaccttttatacgctgtggacca
cagattgacaaggtgctgatcgagtttgttgatatgttggatgacccgagattgacctct
ttatactcgtcttttcgctcaattaattga
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integrated database retrieval system
