Oryza sativa japonica (Japanese rice) (RAPDB): Os03g0110400
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Entry
Os03g0110400 CDS
T02163
Name
(GenBank) Conserved hypothetical protein
KO
K12878
THO complex subunit 1
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03013
Nucleocytoplasmic transport
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os03g0110400
09122 Translation
03013 Nucleocytoplasmic transport
Os03g0110400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os03g0110400
03041 Spliceosome [BR:
dosa03041
]
Os03g0110400
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
Os03g0110400
Spliceosome [BR:
dosa03041
]
Complex C
Other components
EJC/TREX
Os03g0110400
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Os03g0110400
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-ProteinID:
BAF10629
RAP-DB:
Os03g0110400
UniProt:
Q10SU9
LinkDB
All DBs
Position
3
Genome browser
AA seq
638 aa
AA seq
DB search
MAEPTPPLPSNAGLRILLSKDRPPASSSSALAAATSAAVSSHTDRDRIIGVFRDALSRTE
SPEAFALQAVQDAIKPQKQTVLVLEENQSLENALRKLLQELASSAVQSGKRIMQYGDNEE
NNCPITRLLDIVLYLCERGHVEGGMVFQLLEDLTEMSTIKDCKDVFGYIESKQDVLGKQE
LFGRGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFLAHFFPLSERSALNIKGVFNTSNET
KYEKDATDGISVDFNFYNTLWSLQEHFSNPALTAANLTRWQKFVSNLTVVLSTFEAQPLS
DDDGKLNNLDQEEDAAFNIKYLTSSKLMGLELKDPSFRRHILVQCLIFFDFLKAPGKTDK
EGPTGSMKEEIDSCEERVKKLLEIIPPKGKDFLQSIEHILEREKNWVWWKRDGCLAFEKQ
PFEKKPGQAGVRKRKPRWRLGNKELAQLWKWAEQNPNALTDSERICMPSVTEYWKPLAED
MDPSAGIEDEYHHKNNRVYCWKGLRFSARQDLEGFSRFCDYGIEGVVPQELLPPEVRSKF
YSKPGDKAKRPKREDPKGTSAQPKEQQVVSATPETDGGGSGAEPEEGAVPMDSDNAAIDE
GRKQSPEEVSGPESGQCEAEADGEDNMKNEASKDGPSA
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcccacgccgccgctgccgtcgaacgccgggctccgcatcctcctcagcaag
gaccggccaccggcctcctcttcctccgcgctcgccgccgccacctccgccgccgtctcc
agccacaccgaccgcgaccgcatcatcggagtgttccgggatgcgctgtctaggactgaa
tcccctgaagcttttgcccttcaggccgttcaggatgcgattaaacctcagaagcaaaca
gtgttggttctggaggagaaccaatccttagaaaatgctctacgcaaattgctgcaggaa
cttgcatcatctgcagttcaatctggtaaaagaataatgcaatatggggataatgaagaa
aataattgcccgataacacgtcttcttgatatcgtgctttacctttgtgaaagagggcat
gttgagggaggtatggtattccagctgttagaagatctgacagaaatgtcaactatcaaa
gactgcaaagatgtatttggatatattgagagcaaacaagatgtcttggggaagcaagag
cttttcgggcgtggcaagcttgttatgctaaggacttgcaaccaactacttcgaagatta
tcaaaggcaaatgatgtggtattctgcggacgtattatcatgtttctagcacatttcttc
ccattatcggaacgttcagctctcaatatcaagggggtttttaacacatcaaatgaaaca
aagtacgagaaagacgctacagatggaatttctgttgatttcaacttctacaatacccta
tggagtctgcaggagcattttagtaaccctgctttaactgctgcaaatctgacaagatgg
caaaagtttgtgtccaatttaacggttgtgctaagcacatttgaagctcagcctctcagt
gacgatgatggaaaacttaacaatcttgaccaagaggaagatgctgctttcaatattaag
tacctgacaagtagtaaattgatgggtttggagttgaaggacccaagttttcgacgccac
atccttgtccagtgcctcatattcttcgactttctcaaggcacctggaaagactgacaaa
gaaggtccaactgggagcatgaaagaggaaatcgattcttgtgaagagcgtgttaagaaa
cttctggagataattccaccaaaagggaaggacttcctacaaagcatcgagcatattctt
gagcgggagaaaaattgggtatggtggaaacgagatgggtgtctagcgtttgaaaaacaa
ccttttgaaaagaaaccaggccaagctggagtcagaaaacgtaagccaaggtggagattg
ggaaacaaagaacttgcccaactgtggaaatgggctgaacaaaaccctaatgctctgact
gattctgaacgtatttgcatgccatcagtaacagaatattggaaaccacttgcagaagat
atggatccatctgctggtattgaggatgaatatcaccacaagaataatcgtgtgtattgc
tggaaagggttacgattttcagccaggcaggatttggaaggtttttctcggttttgtgat
tacggtattgaaggagttgtacctcaagaactgttgccacctgaagtccgttccaagttt
tattcgaagcctggtgacaaggctaaacgacctaagagggaagacccaaaaggcacttca
gcccaacccaaggaacaacaggttgtttcagccacaccggagaccgacggtggcggtagc
ggggctgaaccagaagaaggtgctgtgccaatggattctgataatgccgcgatcgatgaa
ggccggaagcagagcccagaggaggtgtctggacctgaaagcgggcagtgcgaggctgaa
gccgatggcgaagataacatgaaaaatgaggctagtaaagacggtccatccgcatag
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