Oryza sativa japonica (Japanese rice) (RAPDB): Os03g0143400
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Entry
Os03g0143400 CDS
T02163
Name
(GenBank) Similar to mitochondrial chaperonin-60 [Oryza sativa (japonica cultivar-group)]
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os03g0143400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os03g0143400
03110 Chaperones and folding catalysts [BR:
dosa03110
]
Os03g0143400
03029 Mitochondrial biogenesis [BR:
dosa03029
]
Os03g0143400
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dosa04147
]
Os03g0143400
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Os03g0143400
Messenger RNA biogenesis [BR:
dosa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Os03g0143400
Chaperones and folding catalysts [BR:
dosa03110
]
Heat shock proteins
HSP60 / Chaperonin
Os03g0143400
Mitochondrial biogenesis [BR:
dosa03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Os03g0143400
Exosome [BR:
dosa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Os03g0143400
Exosomal proteins of other body fluids (saliva and urine)
Os03g0143400
Exosomal proteins of breast cancer cells
Os03g0143400
Exosomal proteins of colorectal cancer cells
Os03g0143400
Exosomal proteins of bladder cancer cells
Os03g0143400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
ChlI
Motif
Other DBs
NCBI-ProteinID:
BAF10852
RAP-DB:
Os03g0143400
UniProt:
B9FB06
LinkDB
All DBs
Position
3
Genome browser
AA seq
577 aa
AA seq
DB search
MYRAAASLASKARQAGSSARQIGSRLALHRNYAAKDIKFGVEARALMLRGVEELADAVKV
TMGPKGRTVVIEQSFGAPKVTKDGVTVAKSIEFSNRVKNVGASLVKQVANATNDTAGDGT
TCATVLTKAIFAEGCKSVAAGMNAMDLRRGISMAVDEVVTNLKGMARMISTSEEIAQVGT
ISANGEREIGELIAKAMEKVGKEGVITITDGNTLYNELEVVEGMKLDRGYISPYFITNQK
NQKCELDDPLILIHDKKVSNLHAVVKVLELALKKQRPLLIVAEDVESEALGTLIINKLRA
GIKVCAVKAPGFGESRKANLQDLAILTGGEVITEELGMNLENFEPQMLGTCKKVTVSKDD
TVILDGAGDKKAIEERAEQLRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEV
GEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKDLDKLQTANFDQKIGVQIIQNALKT
PVHTIASNAGVEGSVIIGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAA
SVSSLMTTTESIIVEIPKEEEAAAAAPAMGGMGGMGF
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgtaccgcgcggcggccagcctcgcctccaaggcccgtcaagccgggagcagcgctcgt
cagattgggagtaggctcgccttgcatagaaactatgctgccaaggacatcaagtttggt
gtcgaggcccgggccttgatgttgaggggtgttgaggagttggctgatgcggtcaaagtg
acaatgggtcctaagggacgcactgttgttattgagcaaagctttggtgctcctaaagtt
acaaaggatggagttactgttgccaagagcattgaattcagtaacagggttaagaatgtt
ggtgcaagccttgtgaagcaggttgctaatgcgactaacgacactgctggggatgggaca
acatgtgctactgttcttacaaaagctatattcgctgagggatgcaagtctgtagcagct
ggaatgaatgcgatggatttgagacgtggtatctcgatggctgttgatgaagtagtgaca
aatttaaaaggcatggccagaatgattagcacatcagaggaaatagcacaggttggtact
atatcagctaatggggaaagggaaattggtgagctcattgcaaaagctatggagaaggtt
ggcaaagagggagtcatcactattacggatggtaacaccctctacaatgagcttgaagtt
gtagaaggcatgaaacttgacagaggttatatctctccttacttcattaccaaccaaaag
aaccagaaatgtgaactagacgatccactgatcttgatacatgacaagaaagtgtccaac
cttcatgctgtggtgaaagtgttggagttagctctgaagaagcaaaggcctctgcttatt
gttgcagaggatgtagaaagtgaagcattgggtactctgattattaacaagcttcgtgca
ggcattaaggtttgtgcagtcaaagctcctgggtttggggagagcaggaaagccaactta
caggacctcgctatccttactgggggagaagtcataactgaagaacttggaatgaacctt
gagaattttgagcctcagatgctggggacttgcaagaaggttacagtatctaaggatgac
acagtcatccttgatggagctggagataagaaggccattgaagagagagctgagcagctg
agatctgcaattgagctaagcacttctgactatgataaagagaagcttcaggagcggtta
gcaaagctttctggtggtgttgctgttctaaagattggtggagctagtgaagcggaggtt
ggtgagaagaaggatagagtgactgatgcactaaatgctaccaaagctgctgtagaggag
ggtattgtaccaggtggtggagttgcccttctgtatgcatcaaaagacctggataaattg
cagactgcgaactttgaccaaaagattggtgtccagatcattcaaaatgctttgaagacc
ccagtgcacacaattgcttcgaatgcgggtgtagaaggatctgtcattattggcaagctt
ttggaacaggataatactgatctaggttatgatgctgctaaaggtgaatacgttgacatg
gtgaagtctggtatcattgacccactaaaagttatcagaacagctctggtggatgctgca
agtgtgtcctctctaatgactaccacagaatctattattgttgagatccccaaggaagag
gaggcagcagccgcagcacccgcaatgggtggcatgggcgggatgggtttctag
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