Oryza sativa japonica (Japanese rice) (RAPDB): Os03g0157800
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Entry
Os03g0157800 CDS
T02163
Name
(GenBank) 3'-5' exonuclease domain containing protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os03g0157800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os03g0157800
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
Os03g0157800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
BAF10931
RAP-DB:
Os03g0157800
UniProt:
A0A8J8XN55
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Position
3
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AA seq
600 aa
AA seq
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MDEFKGPGEKEKEEEAGDKAAAEEAGDGFQVVRGKKKKRPNGGSASGAGSGTMMAKDKAA
AAAAAEPWTKAKVSFHDPNIPRPQDVYAIRVNNYNVPFDHVWLERTEDGSRPIHPLEKLP
MEQFIDRNVPESEPVKPADLEDTPFTLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQ
GLTCLMQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIY
VCNLFDTGQASRVLQMERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTH
YLLYMYDLMRLRLQKESTSDNDLLLEVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHDL
DAKQLAVVYALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFV
DENLDQVVGIIWNATESSYAFESRAEQLKKERLEQLTDRVQTISSPEMKTSMNLSGQIRS
MDKEILSDNIHQQVAQATFQELKRPMALGAVGNSTSGGQRDFFGGFSNKSEKMEKAKSYP
AFYYPQLPQYSPEVGYGFQSINRTMAGTAQSPTGNKERDLQNPRRRQSFPPSGNISDTHQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttcaaaggcccaggggagaaggagaaggaggaggaggccggggacaaggcc
gcggcggaggaggcgggggacggattccaggtggtgcgcggtaagaagaagaagcggccc
aatggtggttcggcttcgggtgctgggtcggggacgatgatggccaaggacaaggcggcg
gcggcggcggccgcggagccgtggacgaaggcgaaggtgtctttccacgatcccaacatt
ccgcggccgcaggatgtgtacgcaatcagagtgaacaactacaacgtgccgttcgaccat
gtctggctagagcgcaccgaagatggcagccgccctatccaccctctggaaaaactgcca
atggagcagtttattgacagaaatgttcctgaaagtgaacctgtaaagccagctgatttg
gaggataccccatttacgctagttgaagataagaatggtttagcagacttagctaaaaag
ttgaagagtgtaaatgaatttgctgttgacttggagcacaatcaatataggtcatttcag
ggtttgacctgcttgatgcagatttcaacaagaacagaggattttgttgtagacaccctt
aaacttcgcatatacattggtctctacttgaaagaacattttaaagatccaaccaagaga
aaggtaatgcatggggctgatcgtgatattatgtggctccaacgggatttccacatatat
gtttgcaatctttttgacacaggacaggcttcaagggttttacagatggagcgaaacagc
ctagagcacctattgcgtcacttttgtggagtcacagcaaataaagaatatcaaaacgct
gattggaggtcaaggccactttctgatgaaatgataaagtatgctagagaagatacacac
tatctgttgtatatgtatgacttgatgaggttgagactgcaaaaggagtcgacatctgac
aatgatcttcttctagaggtgcaaaagcgcagtaatgaaatttgtttacagttgtatgaa
aaggaactgctgacagatacatcttatctccacatatacgggttgcaagaacatgacctg
gatgcaaaacagctggctgttgtatatgctctacatcaatggagagattatatagctcgt
gaagtagatgagagcactggttatgtgttaccaaataaggctttaattgagatagcaaag
aagatgcctacagatactgcagagttaaaaagaatggtgaaatcaaaatatccatttgtt
gatgaaaatctggaccaagtcgtaggcatcatatggaatgcaactgaatcttcttatgcc
tttgaaagcagagctgaacaactaaagaaggaacgtctggagcagctaacggacagggtt
cagactatatcatcacctgagatgaagacatctatgaacttatcaggccagattagatca
atggataaggaaatactgagcgataacatacatcagcaggtggcacaggctacttttcaa
gaactgaagagacctatggctttgggagcagtagggaattcaacatccgggggacagaga
gatttctttggagggttttcaaataagtctgagaagatggagaaggctaaatcctatcca
gccttttactacccccagcttccacaatatagccctgaagttgggtacggctttcaatca
ataaaccgaactatggcgggaacagcacagtctcctactggcaataaggagagggatctc
cagaaccctagaagacgtcaatctttcccaccttccggtaacataagtgatacacaccag
taa
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