Oryza sativa japonica (Japanese rice) (RAPDB): Os03g0166800
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Entry
Os03g0166800 CDS
T02163
Name
(GenBank) Endonuclease/exonuclease/phosphatase domain containing protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os03g0166800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os03g0166800
Enzymes [BR:
dosa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
Os03g0166800
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Os03g0166800
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
Os03g0166800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-ProteinID:
BAF10991
RAP-DB:
Os03g0166800
UniProt:
A3AEH4
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All DBs
Position
3
Genome browser
AA seq
607 aa
AA seq
DB search
MLTILRVHLPSEIPIVGCEITPYVLLRRPDGGISTEDVHEAIPLDGHFMRYKWYRIQSDR
RVAVCNVHPTEQATIQCLGCLKSKIPVAKSYHCSAKCFSDAWQHHRVLHERALSALNENG
NEEEELFGRFGSGNAGIINASLSGSTSNIGQSSSVNNGPTPVYPTGTEKNSGETWFEVGR
SRTYTPTADDIGHALRFECVAVDSETRSSVGAPTSIMTSRVIPAPTPTPRRLIPVNSADV
MGHFDLDSRNSSFGTFTVLSYNILADTYATSDTYSYCPTWALSWPYRRQNLLREIIGYHA
DIICLQEVQSNHFEEFFAPELDKHGYQALFKKRTTEVYTGNLQSIDGCATFFRRDKFSHV
KKYEVEFNKAAQSLTDAIIPAAQRKVALTRLIKDNIALIAVLEAKFGSHGADNPSKRQLL
CVANTHINVHQDLKDVKLWQVNTLLKGLEKIAVSADIPMLVCGDFNATPGSTPHGLLAMG
KVDLMHPDLAIDPLGILRPASKLTHQLPLVSAYSSFARMVGAGYDLEHQRRRMDPATNEP
LFTNCTRDFTGTIDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFR
CKPRVRR
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccatcctgcgggtgcacctcccgtcggagatccctatcgtgggctgcgagatc
acgccctacgtgctcctgcggcgccccgatggcggcatctccaccgaagatgtgcatgag
gccatccctctggatgggcactttatgcggtataaatggtaccgcatacaaagtgatcga
agagtcgctgtctgcaatgttcatccaacagaacaggcaacaatacagtgcttggggtgt
ttgaagtcaaaaataccagttgctaagagctaccattgttctgctaagtgcttctcagat
gcctggcaacaccacagggtgttgcatgaacgtgctttgagcgctttaaatgaaaatggc
aacgaagaggaggagttatttggccgatttggtagtggcaatgcagggattataaatgcc
agtttatctggctcaacatcaaatattggacagagctcaagtgttaataatggacctaca
cctgtgtatcccactggaactgaaaagaattctggtgaaacttggtttgaagtgggacgt
tcacggacgtatacgccaactgctgatgatattgggcatgccctaagattcgaatgtgta
gcagtggattcagaaacaaggtcgagtgtgggagctccaacttcaatcatgacatctcgt
gtaattcctgctccaacacccactccgcgtcgtctgataccagtgaattcggctgatgta
atgggacactttgatctagacagccgaaattcttcttttgggacattcacagtgttgtct
tacaatattcttgctgatacatatgcaacaagtgatacatacagctattgcccaacttgg
gcactttcatggccttacagaagacaaaatttgctgcgtgaaataattggttaccatgcg
gatatcatctgccttcaggaggtacaaagtaaccactttgaagaattctttgcaccggag
cttgacaaacatggatatcaggcactgttcaagaaaaggacaactgaggtgtacactggc
aatctccaatcaattgatggatgtgctactttctttcgaagggacaaattttcacatgtc
aaaaaatacgaggttgagtttaataaggctgcacagtctttaactgatgcaattattcca
gctgctcaaagaaaagtggctttaactcgattgattaaggataacattgcgttgattgca
gttttagaagctaagtttggtagccatggggctgataaccctagcaaaagacagctcctt
tgtgtggcaaatacgcatatcaatgttcaccaagacctcaaagatgtcaagctatggcag
gttaacaccctcctaaaaggtttagaaaaaatagctgtcagtgcggacattccaatgctg
gtctgtggagatttcaatgcaacccctggaagtactccacatgggcttcttgcaatgggg
aaagttgatctgatgcatccagatctagcaatagatcctcttggaattttgcgaccagca
agcaagttgacacaccagcttcctctggtgagtgcgtactcttcatttgcaaggatggtt
ggtgctggttatgatttggagcaccagaggaggagaatggaccctgcaacaaatgaacca
cttttcacaaattgcacgagggatttcactgggaccattgattacatattttacacagcg
gattcgttatcagtggaatcgttgctggaacttctggatgaggatagcttacggaaagac
actgcgcttccttcacctgaatggtcatcagatcatatagcactcttagcagaatttcgg
tgcaagcctagagttagacgatga
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