Oryza sativa japonica (Japanese rice) (RAPDB): Os03g0178000
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Entry
Os03g0178000 CDS
T02163
Name
(GenBank) EF-1 alpha
KO
K03231
elongation factor 1-alpha
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Os03g0178000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os03g0178000
03016 Transfer RNA biogenesis [BR:
dosa03016
]
Os03g0178000
03012 Translation factors [BR:
dosa03012
]
Os03g0178000
04131 Membrane trafficking [BR:
dosa04131
]
Os03g0178000
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dosa04147
]
Os03g0178000
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
Os03g0178000
Transfer RNA biogenesis [BR:
dosa03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
Os03g0178000
Translation factors [BR:
dosa03012
]
Eukaryotic type
Elongation factors
Os03g0178000
Membrane trafficking [BR:
dosa04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
Os03g0178000
Exosome [BR:
dosa04147
]
Exosomal proteins
Proteins found in most exosomes
Os03g0178000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Semialdhyde_dhC
AAA_22
SRPRB
FlpD
Motif
Other DBs
NCBI-ProteinID:
BAF11062
RAP-DB:
Os03g0178000
UniProt:
Q0DUM6
LinkDB
All DBs
Position
3
Genome browser
AA seq
447 aa
AA seq
DB search
MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKK
VGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQD
VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNV
KNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF
AELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQT
VAVGVIKNVEKKDPTGAKVTKAAAKKK
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaggagaagacgcacatcaacattgtggtcattggccacgtcgactccggcaag
tcgaccaccacgggccatctgatctacaagcttggaggtatcgacaagcgtgtgatcgag
aggttcgagaaggaagccgctgagatgaacaagaggtccttcaagtacgcgtgggtgctc
gacaagctcaaggccgagcgtgagagaggtatcaccattgatatcgccctgtggaagttc
gagaccaccaagtactactgcacggtcatcgatgcccctggtcaccgtgacttcatcaag
aacatgatcacgggtacctcccaggctgactgtgccgtgctcatcattgactccaccact
ggtggttttgaggctggtatctccaaggatggccagacccgtgagcacgctcttcttgct
ttcactcttggagtgaagcagatgatctgctgctgcaacaagatggatgccaccactccc
aagtactccaaggcccgttatgatgaaatcgtgaaggaagtctcatcctacctgaagaag
gtcggctacaaccctgacaagattccctttgttcccatctctgggtttgagggtgacaac
atgattgagaggtccaccaaccttgactggtacaagggccccaccttgcttgaggctctt
gaccagatcaacgagcccaagaggccatcagacaagcccctacgtcttccccttcaggac
gtgtacaagatcggcggtattggtaccgtgcctgtgggtcgtgttgagactggtgtcctc
aagcctggtatggtggtgacctttggtcccagcggtctgaccactgaggtcaagtcggtt
gagatgcaccacgaggctctccaggaggctcttcctggtgacaacgttgggttcaacgtg
aagaacgttgccgtgaaggatctgaagcgtgggtacgtggcctctaactccaaggatgac
cctgccaaggaggctgccagcttcacctcccaggtgatcatcatgaaccaccctgggcag
atcggcaatggctacgccccagtgctggactgccacacctcacacattgccgtcaagttt
gctgagctggtgaccaagatcgacagacgatccggcaaggagctggagaaggagcccaag
ttcctcaagaacggtgatgctggtatggttaagatgattcccaccaagcccatggttgtg
gagaccttctctgagtaccctcctcttggtcgttttgccgtgcgtgacatgaggcaaacg
gtggctgttggcgtcatcaagaacgtggagaagaaggacccaaccggtgccaaggtgacc
aaggctgccgccaagaagaaatga
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