Oryza sativa japonica (Japanese rice) (RAPDB): Os03g0214100
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Entry
Os03g0214100 CDS
T02163
Name
(GenBank) Replication protein A1
KO
K07466
replication factor A1
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03030
DNA replication
dosa03420
Nucleotide excision repair
dosa03430
Mismatch repair
dosa03440
Homologous recombination
dosa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Os03g0214100
03420 Nucleotide excision repair
Os03g0214100
03430 Mismatch repair
Os03g0214100
03440 Homologous recombination
Os03g0214100
03460 Fanconi anemia pathway
Os03g0214100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dosa03000
]
Os03g0214100
03032 DNA replication proteins [BR:
dosa03032
]
Os03g0214100
03400 DNA repair and recombination proteins [BR:
dosa03400
]
Os03g0214100
Transcription factors [BR:
dosa03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
Os03g0214100
DNA replication proteins [BR:
dosa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
Os03g0214100
DNA repair and recombination proteins [BR:
dosa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
Os03g0214100
MMR (mismatch excision repair)
Os03g0214100
DSBR (double strand breaks repair)
HR (homologous recombination)
Os03g0214100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
SH3_Rv0428c
Motif
Other DBs
NCBI-ProteinID:
BAF11283
RAP-DB:
Os03g0214100
UniProt:
Q10Q08
LinkDB
All DBs
Position
3
Genome browser
AA seq
630 aa
AA seq
DB search
MDSDAAPSVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPIGTRFTFLASDGKDKIK
TMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQEKVLIITKLEVVFKALDSEIKCEA
EKQEEKPAILLSPKEESVVLSKPTNAPPLPPVVLKPKQEVKSASQIVNEQRGNAAPAARL
AMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATM
FNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEAEGETFIPQ
IQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTV
TISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQ
LRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNA
YISLIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEA
WLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKR
QRITVRSEAPVDHAAEAKYMLEEIAKLTGC
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggattccgacgcggcaccgtcagtgacgccgggggcggtggcgttcgtcctggagaac
gcgtcgccggacgcggccaccggcgtgccggtgccggagatcgtcctccaggtcgtcgac
ctcaagcccatcggcacccgcttcactttcttggcgagcgatggcaaggacaagataaag
acgatgcttctcacccagctcgctccggaggtgcgctccggcaacatccagaatctcggc
gtcatccgcgtcctcgactacacctgcaacaccatcggcgaaaagcaggaaaaggtcttg
attatcacgaagctcgaggtcgtgttcaaggcgctggattccgagatcaagtgcgaggcc
gaaaagcaagaggagaagccggcgattctgttgagtcccaaggaggaatccgtggttctc
tccaagcccacgaacgcgccgccacttcctccggttgtgctgaagcccaagcaggaggtg
aagtccgcgtcccagatcgtgaacgagcagcgcggcaatgctgctcctgcggcgcggttg
gccatgacgagaagagttcatcctttgatctccctgaacccctaccagggcaactggatc
atcaaggtgcgtgtcacaagcaagggcaacctgaggacgtacaagaatgctcgtggtgaa
ggctgcgtcttcaatgtggagctcactgatgtggatggcacccagatccaggcaaccatg
ttcaacgaggctgccaagaagttctatccgatgtttgagctggggaaggtgtactacatc
tccaaaggatctctcagagtcgccaacaagcagttcaagactgtccataatgactacgag
atgaccctgaatgagaatgctgttgttgaggaagctgagggcgaaacttttatcccacag
attcagtacaactttgtcaagattgatcagctagggccatatgttggtggcagggagcta
gtagatgttattggggttgttcagagcgtatctcctactcttagtgttaggaggaagatt
gacaacgagacgattccaaagcgtgacatcgttgtagcggatgactcgagcaaaactgta
accatatctctttggaatgatcttgccacaactactggtcaggagctcttggacatggta
gactctgcgcctatcattgcgataaagagcctaaaagtatctgacttccaaggtttgtct
ctgtcaactgtggggagaagtacaattgtagtgaatcctgacttgcctgaggcagaacag
ctcagagcttggtatgactctgaaggcaagggtacttcaatggcatcaattggttcagat
atgggcgcatcaagggttggtggcgcgagatccatgtacagtgatagagtttttctgtct
cacatcacaagtgaccccaacttgggtcaggataagcctgtgttcttcagtctgaatgcc
tatattagccttatcaagcctgaccaaaccatgtggtaccgagcttgcaagacctgcaac
aagaaggtgactgaggcaattggatcaggatactggtgtgaagggtgccagaagaatgat
gctgagtgctcactgaggtacatcatggtcatcaaggtctccgaccctactggtgaggcc
tggctttctctgttcaatgatcaggcagagaggattgttggctgcagtgcagatgagctt
gatcggattaggaaggaggagggtgatgacagttaccttctcaagctgaaggaagctact
tgggttcctcacctgttccgcgtcagcgtaactcagaatgagtacatgaatgagaagagg
cagaggatcactgtgaggagtgaagctccggtagaccacgcagctgaagccaagtacatg
ctcgaggagatagccaagctgacaggttgctag
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integrated database retrieval system
