Oryza sativa japonica (Japanese rice) (RAPDB): Os03g0309200
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Entry
Os03g0309200 CDS
T02163
Name
(GenBank) Similar to Phytochrome B
KO
K12121
phytochrome B
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
Os03g0309200
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Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_3
PAS_8
Motif
Other DBs
NCBI-ProteinID:
BAF11824
RAP-DB:
Os03g0309200
UniProt:
Q10MG9
A0A0P0VWK1
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Position
3
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AA seq
1120 aa
AA seq
DB search
GEVRRGKNRTHPQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQ
RGGHIQPFGCTLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADAR
LLFAPSSAVLLERAFAAREISLLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDP
ALSIAGAVQSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHG
EVVAESRRNNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPL
CLVGSTLRSPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVC
HHTSPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTG
IVTQSPSIMDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLA
DAGYPGAAALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPR
SSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELE
LRGIDELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVND
LIFKESEETVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVG
VCFVGQDVTGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTG
WSRGEVVGKLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQ
ALLTANTRSRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNP
LNGIRFTNSLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSL
GSVMNAVVSQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAE
NGWVEIQVRPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSNSRWTTQEGIGLSIC
RKILKLMGGEVQYIRESERSFFHIVLELPQPQQAASRGTS
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
ggtgaggtgaggcgaggaaaaaatcggacgcacccgcagtacaccctggacgcgcgcctc
cacgccgtgttcgagcagtcgggcgcgtcgggccgcagcttcgactacacgcagtcgctg
cgtgcgtcgcccaccccgtcctccgagcagcagatcgccgcctacctctcccgcatccag
cgcggcgggcacatacagcccttcggctgcacgctcgccgtcgccgacgactcctccttc
cgcctcctcgcctactccgagaacaccgccgacctgctcgacctgtcgccccaccactcc
gtcccctcgctcgactcctccgcggtgcctccccccgtctcgctcggcgcagacgcgcgc
ctccttttcgccccctcgtccgccgtcctcctcgagcgcgccttcgccgcgcgcgagatc
tcgctgctcaacccgctctggatccactccagggtctcctctaaacccttctacgccatc
ctccaccgcatcgatgtcggcgtcgtcatcgacctcgagcccgcccgcaccgaggatcct
gcactctccatcgctggcgcagtccagtctcagaagctcgcggtccgtgccatctcccgc
ctccaggcgcttcccggcggtgacgtcaagctcctttgcgacaccgttgttgagtatgtt
agagagctcacaggttatgaccgcgttatggtgtacaggttccatgaggatgagcatgga
gaagtcgttgccgagagccggcgcaataaccttgagccctacatcgggttgcattatcct
gctacagatatcccacaggcatcacgcttcctgttccggcagaaccgtgtgcggatgatt
gctgattgccatgctgcgccggtgagggtcatccaggatcctgcactaacacagccgctg
tgcttggttgggtccacgctgcgttcgccgcatggttgccatgcgcagtatatggcgaac
atgggttccattgcatctcttgttatggcagtgatcattagtagtggtggggatgatgat
cataacatttcacggggcagcatcccgtcggcgatgaagttgtgggggttggtagtatgc
caccacacatctccacggtgcatccctttcccactacggtatgcatgcgagttcctcatg
caagcctttgggttgcagctcaacatggagttgcagcttgcacaccaactgtcagagaaa
cacattctgcggacgcagacactgctgtgtgatatgctactccgggattcaccaactggc
attgtcacacaaagccccagcatcatggaccttgtgaagtgtgatggtgctgctctgtat
taccatgggaagtactaccctcttggtgtcactcccacagaagttcagattaaggacatc
atcgagtggttgactatgtgccatggagactccacagggctcagcacagatagccttgct
gatgcaggctaccctggtgctgctgcactaggagatgcagtgagtggaatggcggtagca
tatatcacgccaagtgattatttgttttggttccggtcacacacagctaaggagataaag
tggggtggtgcaaagcatcatccagaggataaggatgatggacaacgaatgcatccacga
tcatcgttcaaggcatttcttgaagttgtgaagagtaggagcttaccatgggagaatgcg
gagatggatgcaatacattccttgcagctcatattgcgggactctttcagagattctgca
gagggcacaagtaactcaaaagccatagtgaatggccaggttcagcttggggagctagaa
ttacggggaatagatgagcttagctcggtagcaagggagatggttcggttgatcgagaca
gcaacagtacccatctttgcagtagatactgatggatgtataaatggttggaatgcaaag
gttgctgagctgacaggcctctctgttgaggaagcaatgggcaaatcattggtaaatgat
ctcatcttcaaggaatctgaggaaacagtaaacaagctactctcacgagctttaagaggt
gatgaagacaaaaatgtagagataaagttgaagacattcgggccagaacaatctaaagga
ccaatattcgttattgtgaatgcttgttctagcagggattacactaaaaatattgttggt
gtttgttttgttggccaagatgtcacaggacaaaaggtggtcatggataaatttatcaac
atacaaggggattacaaggctatcgtacacaaccctaatcctctcatacccccaatattt
gcttcagatgagaatacttgttgttcggagtggaacacagcaatggaaaaactcacagga
tggtcaagaggggaagttgttggtaagcttctggtcggtgaggtctttggtaattgttgt
cgactcaagggcccagatgcattaacgaaattcatgattgtcctacacaacgctatagga
ggacaggattgtgaaaagttccccttttcattttttgacaagaatgggaaatacgtgcag
gccttattgactgcaaacacgaggagcagaatggatggtgaggccataggagccttctgt
ttcttgcagattgcaagtcctgaattacagcaagcctttgagattcagagacaccatgaa
aagaagtgttatgcaaggatgaaggaattggcttacatttaccaggaaataaagaatcct
ctcaacggtatccgatttacaaactcgttattggagatgactgatctaaaggatgaccag
aggcagtttcttgaaaccagcactgcttgtgagaaacagatgtccaaaattgttaaggat
gctagcctccaaagtattgaggatggctctttggtgcttgagaaaggtgaattttcacta
ggtagtgttatgaatgctgttgtcagccaagtgatgatacagttgagagaaagagattta
caacttattcgagatatccctgatgaaattaaagaagcctcagcatatggtgaccaatat
agaattcaacaagttttatgtgactttttgctaagcatggtgaggtttgctccagctgaa
aatggctgggtggagatacaggtcagaccaaatataaaacaaaattctgatggaacagac
acaatgcttttcctcttcaggtttgcctgtcctggcgaaggccttcccccagagattgtt
caagacatgtttagtaactcccgctggacaacccaagagggtattggcctaagcatatgc
aggaagatcctaaaattgatgggtggcgaggtccaatatataagggagtcggagcggagt
ttcttccatatcgtacttgagctgccccagcctcagcaagcagcaagtagggggacaagc
tga
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