Oryza sativa japonica (Japanese rice) (RAPDB): Os03g0349000
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Entry
Os03g0349000 CDS
T02163
Name
(GenBank) Nucleoporin interacting component family protein
KO
K14309
nuclear pore complex protein Nup93
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
Os03g0349000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os03g0349000
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
Os03g0349000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
TPR_12
TPR_2
TPR_8
TPR_1
Motif
Other DBs
NCBI-ProteinID:
BAF12020
RAP-DB:
Os03g0349000
UniProt:
A0A8J8XSH5
LinkDB
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Position
3
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AA seq
870 aa
AA seq
DB search
MAGVGGSSSGGGDVEMGGWSELLHSSTKLLEQAAPTPHFPPLQRNLDQLEVLSTKLKAKT
VRAEAPVQSLSATRLLAREGINAEQLARDLKSFELKTTFEDVFPSEATTVEEYLQQLHEM
AIVSSIQEAQKDNLRSFNNYMMQVLEDDWQKEKRDFLQSLSRLSTLPKRNTNLMASGISR
PALMPSSASSPQSSSGLPSKEVMPIPNKTIIENKSSVYAAVVRDLNDARGRSLPFGPATA
FRAAYESLSVGAIGTKSVTMHKVWHLIQALVGEGSTHRNISRKMSLVIGARRHLEWGHEK
YILETINSHPALAALGGSVGNLQKIRAFLRVRLRDHGVLDFDATDLRRQPPVDTTWQQIY
FCLRTGYYDEARQVAQSSRAAFNFAPLLVEWITTNGAVSPETALTASEECDKMLRMGDRP
GRPGYDRKKLLLYAMICGCRRQIDRLLKDLPTLFNTIEDFLWFKLSALREYTSASSSNVS
NEGLVPYTLEDLQSYLNKFEPSYYTKNGKDPLVYPYVLLLSIQLLPAILYLSKEVGEEGY
HVDAVHISIALSDHGVLPDGVGSGQKMGIMDACAEAASIIRQYGSIYLRNGNLDLALEYY
AQSAAAMGGGEVSWIGRGNADQQRQRNLMLKQLLTEILLRDGGIQLLLGPSGMGEEGELK
KYMMDWRSRQQFLLEAAHQCHEAGLYDKSVEIHKRVGAFAMALQTINKCLSDAICAMARS
MLDGESRAAALIHSGNEIMETARYSEASVQDKDLISEQQTVLRQLEAILHIYRLARAGQT
LDALRETIKLPFLHLDPQAPNVTVDVFRNLSPHVQACVPDLLKVALNCMDNVRDTDGTLR
AVKSKIANLVASNMSRNWPQDLYQKVAQCI
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgtcggcggcagcagcagcggcggcggcgacgtggagatgggcgggtggtcg
gagctcctccactcctccactaagctcctcgagcaggccgcccccaccccgcacttccct
cccctccagaggaacctggaccagctggaggtgctctccaccaagctcaaggccaagacg
gtgcgcgccgaggcgcccgtgcagtcgctctccgccaccaggttgttggcgcgcgagggg
atcaatgcggagcagctcgccagggacctcaaatccttcgaacttaagaccacatttgag
gatgtttttccatctgaagcaactactgtcgaggagtacctgcagcagcttcatgaaatg
gcaatcgtctcatccattcaagaagcacaaaaggacaacttaaggagttttaacaattat
atgatgcaagttctcgaggatgattggcagaaggagaagcgagacttcttgcagagtcta
agccgactctctacattaccgaaaagaaacactaatctcatggccagtgggatttctcgt
cctgctctgatgccatcttcagcttccagtccccaatcttcgtccggtctgccatctaag
gaagtcatgcccatacctaacaaaactataattgaaaacaaatcttcagtttatgctgca
gttgtgagagatcttaatgatgctagagggcgcagcctaccttttggtcctgctacagca
ttcagggctgcttatgagtctttatctgttggtgctattgggacaaaatcagtgaccatg
cataaagtgtggcatttaattcaggcattagttggggaagggtcaactcatcgaaacatt
tcaagaaaaatgtcactagtgattggtgctagacgacaccttgagtggggtcatgaaaag
tacatacttgagaccatcaatagccatccggctctagctgctcttggtggatctgttggc
aatcttcagaagattcgcgcatttcttcgggtccgtttgcgggatcatggtgtgctagac
tttgatgcaactgatctgcgtagacagccaccagtggacacaacatggcaacagatttat
ttctgcttgagaaccggatactatgatgaggcaagacaagttgcccaatcatctcgtgct
gcattcaactttgctcccctgcttgtagaatggattactactaatggtgctgtatcccca
gagactgctctgacagcttctgaggaatgtgacaaaatgctgagaatgggtgatcgacct
ggccgtcctggttatgataggaagaagttgctcctttatgccatgatctgtggttgtcga
cgtcaaatcgacagattgcttaaagatctgccaacacttttcaatactatagaggatttc
ttgtggttcaaattgtcagctctgcgggagtacaccagtgcatcttcttctaatgtttca
aatgaaggcttggtgccttatactctggaggatctgcaaagttacttaaacaaatttgaa
ccatcatattatacaaagaatggaaaagaccccttggtctatccatatgttctgctgtta
agcatccaattgcttccagcaattctttatttgtctaaagaagttggagaggaaggatac
catgtagatgctgtgcatatttcaattgctttatctgatcatggtgttctccctgatggt
gttgggtcaggccagaagatgggtatcatggatgcttgtgcagaagctgccagtataata
cggcagtatggctctatttatttgcgtaatggtaaccttgatttggccttggagtattat
gcacagtctgctgctgcaatgggtggaggagaggtatcatggattggtcgagggaatgct
gatcagcagcggcagcgaaatctaatgttgaagcaactgctgacagagatattactaagg
gatggtggcattcaacttttgcttggtccaagtggaatgggggaagaaggagaattaaag
aagtatatgatggattggagaagcaggcagcaattcttacttgaagctgcccatcagtgt
catgaggcaggcctctatgacaaatcagtggaaattcataaaagagttggagcttttgcc
atggcacttcagacaataaataagtgcctgtcggatgcaatatgtgccatggcacgcagt
atgttagatggtgaaagtcgtgctgctgctctaattcattctggtaatgaaattatggaa
actgccagatattcggaagccagtgttcaagacaaggacctcatatctgagcaacaaact
gtactgagacagcttgaagctattctccatatctataggcttgctcgagctggacagact
ttagatgctttgagggaaaccatcaaactcccatttcttcatttggatcctcaggctcca
aatgtgacagttgatgtgttcagaaacttgtcaccgcatgttcaagcttgtgtgccagat
ctcttgaaggttgctctaaattgtatggacaatgttagagatactgatgggaccttgcgt
gcagtcaagtcaaagatcgcaaacctcgtggcaagcaacatgagcaggaactggccacag
gatttgtatcagaaggtggcgcagtgcatatga
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