KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os03g0754900
Entry
Os03g0754900      CDS       T02163                                 
Name
(GenBank) Similar to Cleavage stimulation factor 50K chain (Cleavage stimulation factor 50)
  KO
K14406  cleavage stimulation factor subunit 1
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Os03g0754900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dosa03019]
    Os03g0754900
Messenger RNA biogenesis [BR:dosa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     Os03g0754900
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WDR55 WD40_Gbeta WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_EML ANAPC4_WD40 NBCH_WD40 Beta-prop_Aladin WD40_RFWD3 Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_IFT122_1st Cytochrom_D1 Ge1_WD40 Beta-prop_NOL10_N Beta-prop_WDR19_1st Beta-prop_Nup120_160 Beta-prop_SCAP Beta-prop_HPS5
Other DBs
NCBI-ProteinID: BAF13223
RAP-DB: Os03g0754900
UniProt: Q0DNG5
LinkDB
Position
3
AA seq 470 aa
LRTESFSEVRTRCKPNPPRRHTETRGRGREGEGEGEMDAAVQEAKLLRQVNALIVAHLRD
HNLTQAAAAVAAATMTPLAPPEPDGDDSVPANQLLRLVAKGLAVEREETGRGGGAFDSAA
AAAGYGGLLPPLGTNAVDFSTQDVKGSSKSFPKHEARHVSDHKNVVRCAKFSPDGKYFAS
GSGDTSIKFFEVAKIKQMMLGDSKDGPVRPVIRTFYDHTQPINDLDFHPESPILISAAKD
NTIRFFDFSKTVARKAFRVIQDTHNVRSVCFHPCGDYLLAGTDHPVAHLYDINTFTCYLS
ANSHDSNAAINQVRYSSTGSLYVTASKDGSLRIWDGISAECVRPIIGAHASAEVTSAIFT
KDERYVLSCGKDSCIKLWEVGSGRLVKQYVGAVHRQFRCQAVFNQTEEFVVSTDEQNSEV
VVWDALTAENVARLPSGHTGAPRWLGHSPAEPAFVTCGNDRSVRFWKQTV
NT seq 1413 nt   +upstreamnt  +downstreamnt
ctccgaacagagtccttctccgaagtgcgaactcgctgcaagccgaatccgccgcgccgc
cacacggagacgagagggagaggtcgagagggagagggcgagggcgagatggacgcggcg
gtgcaggaggcgaagctgctgcgccaggtgaacgccctcatcgtggcgcacctccgcgac
cacaacctcacgcaggctgccgccgccgtcgccgccgccaccatgacgcccctcgccccg
cccgagcccgacggcgacgactccgtccccgccaaccagctcctccgcctcgtcgccaag
ggcctcgcggtggagcgggaggagacggggaggggaggaggggcgttcgactctgccgcc
gccgccgctggatacggtggattgttgccgccgctcggcaccaatgccgtggatttcagc
acgcaggatgttaagggctcatccaagagcttccccaagcacgaggccaggcacgtatct
gatcacaagaatgttgtccgatgtgcaaaatttagtcctgatgggaaatattttgcatcc
gggagtggtgacacatcaattaagttcttcgaggttgctaaaataaagcagatgatgcta
ggggattccaaagatggccctgtccgtcctgtgatccgtactttttacgatcacacgcag
cccatcaatgatcttgattttcatcctgagagccccatactgatatctgcagcaaaagac
aatacaataaggttcttcgacttctcaaaaactgttgcaaggaaagcattcagagttatt
caggacactcacaatgttagatccgtatgttttcatccttgtggggattaccttttagca
gggactgatcacccagtggctcatctatatgatattaacactttcacatgctacttatcg
gcaaattcacatgattccaatgctgccattaatcaggtccgatactcttctactgggagc
ctgtatgtgactgcttccaaggatggttctctgcgcatctgggatgggatatccgctgaa
tgtgtccggcccataattggagcacatgcatctgcagaggttactagtgcaattttcaca
aaagatgagaggtatgtcctatcatgtgggaaggattcttgtataaaattatgggaagtt
ggctctggacgacttgtcaagcaatatgtaggcgctgttcacagacaatttcgatgtcag
gctgtcttcaaccaaacggaggaatttgtagtatcaaccgatgaacaaaacagtgaggtt
gtcgtctgggatgcacttaccgctgaaaatgtagcaaggttgccctctggccacaccggt
gccccgaggtggcttggccactcccctgcagaaccagcctttgttacatgcggtaacgat
agatccgtcagattctggaaacaaaccgtgtag

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