Oryza sativa japonica (Japanese rice) (RAPDB): Os03t0314100-01
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Entry
Os03t0314100-01 CDS
T02163
Symbol
Os03g0314100
Name
(RAP-DB) DEAD-like helicase, N-terminal domain containing protein.
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os03t0314100-01 (Os03g0314100)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dosa03041
]
Os03t0314100-01 (Os03g0314100)
03009 Ribosome biogenesis [BR:
dosa03009
]
Os03t0314100-01 (Os03g0314100)
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Os03t0314100-01 (Os03g0314100)
Spliceosome [BR:
dosa03041
]
Complex A
U2 snRNP components
U2 related factors
Os03t0314100-01 (Os03g0314100)
Complex B
Os03t0314100-01 (Os03g0314100)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
Os03t0314100-01 (Os03g0314100)
Ribosome biogenesis [BR:
dosa03009
]
Eukaryotic type
90S particles
Helicases
Os03t0314100-01 (Os03g0314100)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_N
Helicase_C
DEAD
AAA_22
HA2_C
AAA_19
ResIII
ABC_tran
SRP54
nSTAND3
T2SSE
Flavi_DEAD
AAA_30
AAA_7
AAA_29
TrwB_AAD_bind
Motif
Other DBs
RAP-DB:
Os03t0314100-01
LinkDB
All DBs
Position
chr03:join(11237881..11238171,11238482..11238669,11238813..11240028)
AA seq
564 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLGRAATTNGSAAAAAANPSINRWTGRPYSARYLEILE
KRRTLPVWQQKDDFLAVLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQPR
RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLERY
KVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQTYFSGAPLMKVPG
RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINN
MGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIV
YVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNDDL
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGN
LTPLGETMSEFPLDPQMSKMLVISPKYNCSNEILSISAMLSGMSNKTSCRHMVCQLNYIV
RNNNTRTILLASIAHCRKLTSFLS
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcgcaaggtgagcctcttcgacgtggtcgacgagacctccgtc
tccgccaagctcggccgcgccgccaccaccaacggctcggccgccgccgccgcggccaac
ccgtccatcaatcggtggacggggaggccctactcggcgaggtacctcgagatcctcgag
aagcgccgcacgctacccgtgtggcagcagaaggacgatttcctcgccgtcctccgcgac
aaccagaccctcatcctcgtcggagaaaccggaagcggcaagaccactcagattccccaa
ttcgtgctcgaggctgaaggcttgagcaaccgctcaatggttgcttgcacccagccgcgg
agggtggcagctatgtcagtttcccggcgtgttgcggaggagatggatgttactatcggg
gaggaagttggttacagcatccgttttgaggattgcagcagtcacaaaacagttctcaaa
tatttgacagatggtatgcttctgagagaagctatggcagacccacttttagagaggtac
aaggtgattgttcttgatgaggcccatgagcggacattagcaacagatgttctgtttggg
cttctgaaggaggttctaaagaacagacctgatttgaagcttgttgttatgagtgctacc
cttgaggctgagaaatttcagacctatttcagtggtgcaccgttgatgaaggtgcctggg
agacttcatccggttgagatcttctatacacaagaaccagaaagggactacctggaagct
gctatcaggacagttgttcagatacatatgtgtgaacctgctggagatatccttgttttc
cttactggagaggaggagattgaggatgcctgtcggaagataaataaggaaattaataac
atgggggatcaggttggcccagttaaagttgtgcctttgtattctacgctgcctccagca
atgcagcagaagatttttgaacctgctccagccccatcaagagagggaggcccagctgga
aggaaaattgttgtgtccacaaatattgctgagacatccctaaccatagatggtatagtg
tatgtgatagacccagggttttccaaacagaaggtttacaatccaaggataagggtggag
tcccttctggtgtcgccaatttcaaaggcaagtgcacatcagagagctggtcgtgctgga
agaacgcaacctgggaagtgtttcaggttatatacagagaagagttttaacgatgattta
cagccacagacatacccagaaattcttaggtcaaatctggcgaatacggttcttaccttg
aagaagcttggaattgatgatttagtgcattttgactttatggatcctcctgcaccagaa
actttgatgagggccttggaagttttgaactacttaggggcacttgatgatgatggaaac
ctcacgcctttaggtgaaacaatgagtgaatttcctctagatccccagatgtcaaagatg
cttgtcatcagtccaaaatacaactgttcaaatgagatcctttcaatatctgccatgctg
tcaggtatgtcaaacaaaacttcatgtcgccatatggtttgtcagctaaattatatagtg
cgtaataataacacccgcacaattttgcttgcatcaattgcacattgtagaaagcttaca
agcttcttatcatga
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integrated database retrieval system
