Oryza sativa japonica (Japanese rice) (RAPDB): Os03t0719800-01
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Entry
Os03t0719800-01 CDS
T02163
Symbol
Os03g0719800, PHYTOCHROME_A, PHYA
Name
(RAP-DB) Phytochrome A.
KO
K12120
phytochrome A
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
Os03t0719800-01 (Os03g0719800)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
PAS_9
HATPase_c
HisKA
PAS_4
PAS_10
PAS_8
Motif
Other DBs
RAP-DB:
Os03t0719800-01
Oryzabase:
531
LinkDB
All DBs
Position
chr03:complement(join(29171166..29173230,29170132..29170948,29169554..29169850,29169244..29169451))
AA seq
1128 aa
AA seq
DB search
MSSSRPTQCSSSSSRTRQSSRARILAQTTLDAELNAEYEEYGDSFDYSKLVEAQRTTGPE
QQARSEKVIAYLHHIQRAKLIQPFGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVDD
PPKLRIGTNVWSLFTDPGATALQKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLV
VDFEPVKPTEFPATAAGALQSYKLAAKAISKIQSLPGGSMEVLCNTVVKELFDLTGYDRV
MAYKFHEDDHGEVFAEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIK
IIEDESLHLDISLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNENEDDDEVGADQPAQ
QQKRKKLWGLLVCHHESPRYVPFPLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQT
MLSDMLLRESSPLSIVSGTPNIMDLVKCDGAALLYGGKVWRLQNAPTESQIRDIAFWLSD
VHRDSTGLSTDSLHDAGYPGAAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKH
DPSDKDDSRRMHPRLSFKAFLEVVKMKSLPWNDYEMDAIHSLQLILRGTLNDDIKPTRAA
SLDNQVGDLKLDGLAELQAVTSEMVRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVD
EAIGRHILTVVEESSVPVVQRMLYLALQGKEEKEVKFEVKTHGSKRDDGPVILVVNACAS
RDLHDHVVGVCFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPSPLIPPIFGADEFGWCSEW
NAAMTKLTGWHRDEVINKMLLGEVFDSTNASCLVKNKDAFVSLCILINSALAGDETEKAP
FSFFDRNGKYIECLLSVNRKVNADGVITGVFCFIQVPSHELQHALHVQQASQQNALTKLK
AYSYMRHAINNPLSGMLYSRKALKNTGLNEEQMKEVNVADSCHRQLNKILSDLDQDSVMN
KSSCLDLEMVEFVLQDVFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQIL
SDFLFVSVKFSPVGGSVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDD
NKEQSDEGMSLAVSRNLLRLMNGDVRHMREAGMSTFILSVELASAPAK
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcaagacctactcaatgttccagttcatccagcaggacccgccaaagctcc
cgggcaaggatattagcacaaacaactcttgatgctgaactcaatgctgaatatgaagaa
tatggcgactcctttgattactccaaattggttgaagcacagagaactactggacctgag
cagcaagctcgttctgagaaggtcatagcttacttgcatcacattcagagagcaaagcta
atccaaccatttggttgcttgttggcccttgatgagaagaccttcaatgttatagcgctc
agcgagaatgcaccagagatgcttacaactgtcagccatgcagtgccaagtgttgatgat
cccccaaagctacgcattggcaccaatgtatggtctcttttcactgacccaggtgccaca
gcactgcagaaggcactgggatttgctgatgtttccttgctgaaccctatcctagttcaa
tgcaagacctcaggcaagcctttctatgccattgttcatcgggcaactggttgtttggtg
gtagactttgagcctgtgaaacctacagaatttccagcaactgccgctggggctttgcaa
tcttacaaacttgctgccaaggcaatctctaagatccagtcactgccaggtggaagcatg
gaggtgctatgcaatacggtggtcaaggaactctttgacctcacaggatatgatagagtt
atggcttataagttccatgaagatgaccatggtgaagtctttgctgagatcacaaagcct
ggtcttgaaccttatcttggcctgcattatccagctactgatatccctcaggcagccagg
tttcttttcatgaagaacaaagtccggatgatttgtgattgccgtgcaagatctatcaag
attatcgaagatgagtcgctccacttggatattagcttatgtggttcaacactgagggca
ccacacagttgtcatcttcagtatatggagaacatgaactcgattgcatcccttgtcatg
gctgttgtggttaatgagaatgaggatgatgatgaagttggggctgatcaacctgcacaa
cagcagaagaggaagaaactatggggactccttgtttgccaccatgagagccccagatat
gttcctttcccattgcggtatgcctgtgagttcttagcacaagtgtttgctgtccatgtt
aacaaggagtttgaattagagaggcaagtacgcgagaaaagcatattgaggatgcaaaca
atgctctctgacatgcttctcagggaatcctctcctctgagtatagtatcagggactccc
aacatcatggaccttgtgaaatgtgatggtgctgctcttttgtatgggggaaaagtgtgg
cggctacagaatgctccaactgagtctcagatacgtgatattgccttctggctgtcagat
gtccacagggattccactggcctgagtactgatagcctacatgatgctggatatccagga
gctgctgctcttggtgatatgatttgtggaatggcagtagctaaaataaattccaaggat
atcctgttctggttcaggtcacatacagctgctgaaatcagatggggaggtgcaaaacat
gatccatcagacaaggatgacagcagaagaatgcaccctaggctgtccttcaaggcattc
cttgaggttgtcaagatgaagagcttgccttggaatgactatgagatggatgctattcac
tcattacaacttatacttagagggacactgaatgatgacatcaagccaacaagggccgct
agtttagataatcaggttggtgatctcaagcttgatgggcttgctgaattgcaggcagtt
acaagtgaaatggttcgtctcatggaaacagcaactgtcccaatcttggctgtagatagc
aatggattggtcaatggatggaatcagaaggttgctgagttgacagggttgagagtagat
gaggctattggaagacacatacttaccgttgtagaggaatcttctgtaccagttgtccag
aggatgctgtatttagctttgcaaggcaaagaagagaaggaagtgaaatttgaggtgaaa
actcatggctccaagagagatgatggccctgttatcttggttgtgaatgcctgtgccagc
cgggaccttcacgaccatgttgttggtgtgtgctttgttgcacaagatatgactgttcat
aagttggtcatggacaaatttactcgggttgagggagactacaaagcaattattcacaat
ccaagcccgcttattcctcccatatttggtgctgacgaatttggatggtgctctgagtgg
aatgctgccatgacgaaattgaccgggtggcatagagatgaggtgatcaataagatgctt
cttggtgaggtgtttgatagcaccaacgcctcctgtcttgtgaagaataaagatgcattt
gtaagtctctgcattcttatcaacagtgcattagctggtgatgaaacagaaaaggctcca
ttcagcttcttcgaccggaacgggaagtatatcgagtgccttctttctgttaacagaaaa
gtaaatgcagatggtgtcatcactggagtattttgtttcattcaagttcctagtcatgag
ctgcaacatgcactacatgtgcagcaagcctcacagcagaatgcactaacaaagttgaaa
gcttactcctacatgagacatgcaatcaacaaccctctctcaggtatgctttactctagg
aaagcactgaagaacacaggtctgaatgaagagcagatgaaggaggtcaatgttgcagat
agttgtcaccgccagctgaataaaatactttctgacttggatcaagatagcgtcatgaac
aagtctagttgcttggatttggagatggttgagtttgtattgcaagatgtgtttgtggct
gctgtaagtcaagtactcataacttgccagggaaaagggattagagtctcttgcaaccta
ccggagagatatatgaagcaaacagtctacggggatggtgttcgactacagcagattctc
tctgacttcctattcgtctcagtgaagttctctcctgttgggggttctgttgagatctct
tgtagcctgaccaagaacagcattggggaaaaccttcatctcatagacctagaacttagg
atcaagcaccagggcaaaggagtcccagcagatctgctgtcacaaatgtacgaggatgac
aataaggagcagtcggatgaaggcatgagtcttgcggtttctagaaacctgctgaggctc
atgaatggcgatgtccgacatatgagggaagctggcatgtcaaccttcatcctcagcgtc
gaacttgcttctgctccagcaaaataa
DBGET
integrated database retrieval system
