Oryza sativa japonica (Japanese rice) (RAPDB): Os04g0195000
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Entry
Os04g0195000 CDS
T02163
Name
(GenBank) Similar to Vacuolar assembly protein VPS41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
Os04g0195000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dosa04131
]
Os04g0195000
Membrane trafficking [BR:
dosa04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
Os04g0195000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40
EIF3I
WD40_Prp19
PROPPIN
WDR55
zf_RING_Vps8_fungal
Beta-prop_HPS5
zf_RING_Vps8
WDR90_beta-prop_4th
zf-RING_2
Beta-prop_WDR11_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-ProteinID:
BAF14127
RAP-DB:
Os04g0195000
UniProt:
A0A5S6R7C8
LinkDB
All DBs
Position
4
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AA seq
949 aa
AA seq
DB search
MSTAARRGHPPPHENGVGGHADDEPDEDGEEEEEEGEGEVEDDEEEEPRLKYQRLGGSVP
AIVSTDAAAAIAVADRMVALGTHNGTLHILDFQGNQVKEIAAHTATINDISFDADGEYIG
SCSDDGTVVISSLFTDEKLKFEYHRPMKAIALDPNYYNNYRRFATGGLAGQVLVLTKKSW
GGGYHKKVLRDGEGPIHSMKWRTDLLAWANDAGVKVHDMKTDKGIAFIERPKGIPRPEFL
LPQLVWQDDTILVIGWGTSVKIAAIRTDSSQGLNGIQRSITASNEKYVDIVGSFQTGYHI
SGIAPFGDLLVVLAYIPEEEDRENSFSNSVPSRQGTAQRPEIHLVSWKNDELTTDALPIH
GYEHYKAKDYALAHAPFSGSSNAGGQWAAGDEPLYYIVSPKDIVVAKPRDAEDHISWLLQ
HGWHEKALAAVEAGQGRTELLDEVGSRYLDHLIIERKYAEAARLCPKLLRGSPSAWERWV
FHFAHLRQLAVLVPYIPTENPQLSDTAYEVALVALTTNPSFHELLLTTVKKWPPTLYSAS
PVISAIEPQLNSSSMTDSLKEALAELYVINSQYDKALSLYAELLKPEVFEFIEKHNLHDA
IHDKVVNLMILDSKRTVNLLIQHRDTIPPNEVVGQLLHASKSCDKRHLLHLYLHALFETD
MNAGKDYHDMQVELYAEYEPRMLIPFLRTSQHYRLDKAYEIFAQKELVREQVFVLGRMGN
AKEALSTIINKLEDIQEAVEFVMEQHDDELWEELIRQCLQKPEMVGMLLEHTVGNLDPLY
IVSLVPDGLEIPRLRDRLVKIVTDYRTETSLRHGCNDILKADCVNLLVKYYHEARRGVYM
ASMDEEVTGTRVAEGSSRANERSSSLRALEIKSRTRCGARCCLCFDPLSIQDISVIVFYC
CHAYHTSCLEGGLDLMKSNSSTQDSDEDDEGTPSGESRMRCVLCTTAAA
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgtccacggcggcgcggcgcggccacccgccgccgcacgagaacggcgtgggcgggcac
gccgacgacgagccagacgaggacggcgaggaggaggaggaggagggggagggggaggtg
gaggatgatgaggaggaggagccgcggctcaagtaccagcggctgggcgggagcgtcccc
gcgatcgtctccaccgacgccgccgcggccatcgccgtcgccgaccgcatggtcgcgctc
ggcacgcacaacggcaccctccacatcctcgacttccagggtaatcaggtaaaggaaatt
gctgctcacacagcaactatcaacgacatcagttttgatgcagacggtgaatatatagga
agctgctctgatgatgggactgtagtaataagcagcctcttcactgatgaaaaactgaag
tttgagtaccatcgacccatgaaagcaattgccttagaccctaattattacaacaactat
agaaggttcgctacagggggtttagcaggtcaagtacttgtgctgacaaaaaagtcgtgg
ggaggtggctaccataaaaaggttctgcgtgatggcgaaggaccaatccattctatgaaa
tggaggacagacctccttgcctgggctaacgatgcaggggtaaaagtgcatgatatgaag
acagacaaaggaatcgcgtttatagagaggccaaaaggaattcctcggccagagttttta
cttcctcagttggtctggcaggatgataccatcttagttattggatggggaacaagtgtc
aagattgcagcaattcgaacagattcatctcaaggactcaatggcatacagaggagtatc
actgcaagtaatgagaagtacgtggatattgtgggttcgttccaaacaggctatcacata
tccgggattgctccatttggtgatcttttagttgtgcttgcatatattccagaggaggaa
gacagagaaaacagttttagcaattctgttccttcacgtcagggaactgcccagcgtcca
gaaatacatcttgtatcatggaaaaatgatgaacttaccacagatgctcttcctattcat
ggttatgagcattataaggcaaaggattatgctcttgctcatgctcctttctcaggaagc
agcaatgcaggtggacagtgggctgctggtgatgaacctttatattacattgtatctcct
aaagatatagtggtcgcaaagccaagagatgctgaagaccatatttcttggcttcttcaa
catggttggcatgaaaaggcattggctgcagttgaagcaggacaaggacgaaccgagctt
cttgatgaggtgggttcgagataccttgatcatttgataattgaaagaaaatatgctgaa
gctgcacgcctctgtccaaaattgttgcgaggatctccttcagcatgggagaggtgggtc
tttcactttgcccatcttcgccaacttgctgtattagttccttacatacctacagagaat
cctcagctgagtgatacagcttacgaggttgctcttgtagctttaactaccaatccttct
tttcatgaacttctcttgacaactgtaaaaaaatggccacctacattatactccgcttca
cctgtcatatctgcaattgagccacagctaaattcctcttcaatgactgattcattaaaa
gaggctttagctgaattgtatgtcatcaacagtcaatatgacaaggccctttctctgtat
gctgaactcttgaagccagaagtattcgaatttattgagaagcacaacttgcatgatgcc
attcatgacaaggttgtcaatcttatgatattggatagtaaaagaactgtaaacctattg
atccagcatcgtgatacgatccccccgaatgaagttgtaggacagttgttgcatgctagt
aaaagttgtgacaaaagacatttgttgcatctgtatttacatgctctgtttgagacagac
atgaatgctggaaaagactatcatgacatgcaggtggagctttatgcagagtatgagcca
aggatgctaatacccttcctccgtaccagtcagcattacaggcttgacaaggcatatgaa
atctttgcacaaaaagagcttgtacgggagcaagtttttgtgcttggtcgtatgggaaat
gcaaaggaagctctctctacaattataaacaaattggaagatattcaggaggccgttgaa
tttgtgatggagcaacacgatgatgagttatgggaggaattgataagacagtgcctccaa
aaacctgagatggttggaatgctgttggaacatactgttggcaatcttgatcctttgtac
attgttagtttggttcctgatgggctagaaataccaaggttgcgggatcgccttgtgaaa
attgtgacagactatcgaacagaaacttcattaagacatgggtgcaatgatatacttaag
gctgattgcgtaaaccttttggtaaaatattatcacgaggctcggcgtggagtctacatg
gctagtatggacgaggaggtgacaggaactagggttgctgaaggatcttcacgagcaaac
gagagatcatcaagtttacgagctttagagatcaaatccagaacaaggtgtggtgctcgg
tgttgcttgtgctttgatcctttgtcgattcaggacatctctgtcatcgtgttctactgc
tgccacgcatatcacacgtcttgcctcgaaggcgggttggacttgatgaaatcgaacagt
agtactcaggacagcgacgaggatgatgaaggtaccccatcaggcgagtctcgaatgcgc
tgtgtattgtgtactacagctgctgcataa
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