Oryza sativa japonica (Japanese rice) (RAPDB): Os04g0388900
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Entry
Os04g0388900 CDS
T02163
Name
(GenBank) Similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F)
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os04g0388900
09123 Folding, sorting and degradation
03018 RNA degradation
Os04g0388900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os04g0388900
03041 Spliceosome [BR:
dosa03041
]
Os04g0388900
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Os04g0388900
mRNA degradation factors
5'-3' decay
Lsm complex
Os04g0388900
Spliceosome [BR:
dosa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
Os04g0388900
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-ProteinID:
BAF14548
RAP-DB:
Os04g0388900
UniProt:
B7E8A4
Q0JDN9
LinkDB
All DBs
Position
4
Genome browser
AA seq
97 aa
AA seq
DB search
MSTGGGADKSGGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLTDDA
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccggcggcggcgcggacaagtccggcggcggcggcggaggggcggtgaagacg
ccctcggacttcctcaagtcgatcaggggacgccccgtcgtcgtcaagctcaactccggc
gtcgactaccgaggtattttggcttgcctggatgggtatatgaacattgcaatggagcaa
acggaagagtatgtgaatggccaactcaagaacaagtatggtgatgccttcataagaggc
aacaatgttctatacatcagcacttcgaagaggacccttacggatgacgcatag
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