Oryza sativa japonica (Japanese rice) (RAPDB): Os04g0434300
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Entry
Os04g0434300 CDS
T02163
Name
(GenBank) Protein of unknown function UPF0004 family protein
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dosa03016
]
Os04g0434300
Enzymes [BR:
dosa01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
Os04g0434300
Transfer RNA biogenesis [BR:
dosa03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
Os04g0434300
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-ProteinID:
BAF14754
RAP-DB:
Os04g0434300
UniProt:
A0A0P0WAF8
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Position
4
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AA seq
621 aa
AA seq
DB search
IEDVLGPAGIAGGGAAPGLRLPLAAVAVKPKRPRSSRVAQTRPQPEARIPGTQTIYVKTF
GCSHNQSDSEYMSGQLSAFGYAITEEPEGADLWLINTCTVKNPSQSAMTTLISKCKSANK
PLVVAGCVPQGSRDLKELEGISVIGVQQIDRVVEVVEETLKGHEVRLLSRKTLPSLDLPK
VRKNKFIEILPINVGCLGACTYCKTKHARGHLGSYTIESLVDRVKIVVSEGVREIWLSSE
DTGAYGRDIGTNLPNLLNGIAAELPADRSTMLRIGMTNPPFILEHLKEIASVLCHPCVYS
FLHVPVQSGSDAVLTAMNREYTVSEFRRVVDTLCELVPGMQIATDIICGFPGETDEDFSQ
TVNLVKQYLFPQVHISQFYPRPGTPAARMKKVPSVEVKKRSRELTSVFESFSPYQGMEGK
VERIWITEIATDGVHLVGHTKGYIQVLVIAPDSMLGTSADVKITSVGRWSVFGEVIEGSV
VAKETQKHNHSELQEEYRPSQVEEATCCGTDSCGACTCSDAAQQCNPGPERSENSTPQSC
GDATHQEAVQSKLVRRNVEGAVKSSESDTAKQVGEIQRLNVAARRFPDVDTILWGGLAVS
FATTVTLIALLAYKISSTPSY
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atcgaggacgtgctggggccggccgggatcgccggcggcggggcggctccggggctccgt
ctcccgctcgccgccgtcgccgtgaagcccaagcgtccgagatcgtccagggtcgcgcag
acccggccgcagcccgaggcccggatccccgggacgcagacgatatatgtgaagacgttc
gggtgctcgcataaccagagtgacagtgagtacatgtcagggcagctgtcagcgtttgga
tatgcgatcactgaagagcccgaaggagcggatttgtggctaattaacacatgcactgtg
aaaaacccaagtcagtctgccatgacaactctcatatcgaagtgcaagagtgcaaacaag
cctttggttgtggctggatgtgtaccacaaggaagccgggatctgaaagagcttgaaggt
attagcgttattggagtgcaacagattgaccgcgttgttgaagttgttgaagaaacctta
aaaggccatgaggttcggttgttgagtcggaaaacactgccctcacttgatttacctaag
gtaaggaagaacaaatttatcgagattcttcctattaatgttgggtgtttgggtgcttgc
acatactgcaagacaaagcatgctcgtggtcatcttggaagctatactatagaaagtttg
gtagatcgtgtgaaaattgttgtctctgaaggtgtccgagaaatatggttgagtagtgag
gatactggtgcttatggcagggatatcggtacaaatcttccaaatctattaaatggaatt
gctgctgagcttcctgcggacagaagcacgatgcttcgcattggcatgaccaatcctcct
ttcatattggagcatttgaaggagattgctagtgttttgtgccatccctgtgtttattct
ttcctccacgttcctgtacaatcaggaagtgatgcagttttaacggcaatgaatcgtgaa
tacactgtgagtgaattcaggagggtagttgacactctttgtgagcttgtccctggaatg
caaattgctacagatattatttgtggattccccggtgagactgatgaggatttctctcaa
actgttaaccttgtaaaacaatatctattccctcaggttcacatatcacaattctacccc
agaccaggaacacctgctgctaggatgaaaaaggttccaagcgttgaagtgaagaaaagg
agccgtgaattgacctcagttttcgagtcattttcaccctaccaaggaatggaaggcaaa
gtagagaggatatggatcactgaaatagctactgatggtgttcatttggttggacatacc
aaaggatatatccaggtgcttgtcattgctcctgatagcatgttaggaacatcagcagat
gtgaagatcacatctgttgggagatggtctgtgtttggtgaagtgatagaaggatccgtt
gtagcaaaggaaacacagaagcataatcacagtgaactgcaagaagaatacaggccaagt
caggttgaggaagccacttgctgcggcacggactcttgtggtgcctgcacatgctctgat
gcagcacagcaatgcaatcccggtccagagcgatccgaaaattcgacgccccaatcctgt
ggtgatgctactcatcaggaagctgttcagtctaaacttgtgagaagaaatgttgaagga
gcggtgaaaagtagcgaaagtgatacagcgaaacaggtaggggagattcagcgactaaat
gtagcagctaggaggttcccagatgttgatacgattctgtggggtggtttggccgtgagc
tttgccacgacagtaaccctcattgcactgctagcttacaagatttcttccacgccctcc
tactag
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