Oryza sativa japonica (Japanese rice) (RAPDB): Os04g0445800
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Entry
Os04g0445800 CDS
T02163
Name
(GenBank) Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core family protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os04g0445800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os04g0445800
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Os04g0445800
mRNA degradation factors
5'-3' decay
Lsm complex
Os04g0445800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-ProteinID:
BAF14819
RAP-DB:
Os04g0445800
UniProt:
B9FFE2
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Position
4
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AA seq
129 aa
AA seq
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MSSWAGPDEIFLSTSLAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGE
LYCDVPLGLYVIRGENVVLIGELDREKDELPAHMTCVSEAEIRKAEKAEREARDLKGSMR
KRMEFLDFD
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtgggccgggcccgacgagatcttcctctccacgtccctggccggcttcttg
gacaagaaacttattgtcctactacgagatggacggaagctgcttggcacactctgctca
tttgatcagtttgcaaatgttgttcttcagggtgcttgtgaacgagtaattgtaggtgaa
ctatattgtgatgttcctcttggtctatatgtgatccggggagagaatgtcgtattaatc
ggagaattggatcgtgagaaggatgaactccctgctcacatgacttgtgtttcagaggct
gaaataagaaaggccgagaaagcagaaagggaagcgagagatctgaaaggttcaatgagg
aagaggatggagttcttagactttgattag
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