Oryza sativa japonica (Japanese rice) (RAPDB): Os04g0480300
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Entry
Os04g0480300 CDS
T02163
Name
(GenBank) SWIRM domain containing protein
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Os04g0480300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dosa03021
]
Os04g0480300
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os04g0480300
Transcription machinery [BR:
dosa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
Os04g0480300
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
Os04g0480300
PBAF complex
Os04g0480300
GBAF(ncBAF) complex
Os04g0480300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-ProteinID:
BAF15014
RAP-DB:
Os04g0480300
UniProt:
Q0JCC3
LinkDB
All DBs
Position
4
Genome browser
AA seq
560 aa
AA seq
DB search
MSPPVAGAASSGDGPPGRPPRELYTIPASSGWFQWDEIHETERRALPEFFGGAGGSGFGT
ASRNPRIYREYRDYIISRYREDTSRRLTFTEVRKALVGDVTLLRKLFAFLDSSGLINFSA
SPSRPEAQQQQRQTEAEAVVEAPVGLQVTPRPPPSYFAEEKGGGGNENGFRLPPLTSYSD
VFGEWAPGMAPICGLCGMECRDGNAQILKDGFKVCSKCYANNDNKGEANIHPGDKKERID
NHSSSAWTDAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTVNG
KLDNRLHKIQTTDGKVNKSTVKESSSQPTETVDDMQIDGNEDGADKSVEEHPTKHRRLFS
SIDITVSLMEQLAHLTTSTSPDVVAAAADAAIKALGNENPQARRAFQLSEKEYQTRAFSS
NHARQSDDVGGGDRDVEMHGHPDKKQGKMFISTTYQVRAAVATSIGVAAARAKMLADQEE
REMELLMASIIETQLKKIQYKIKHFEELELIMDQEYATLQQMKSSLVDEWQKVLKRAFET
GVPISRDEVLIKLFQNKPNL
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccggtggccggcgccgcctcctccggcgacgggccgccggggcgcccgccg
cgcgagctctacaccatccctgcctcctcgggttggttccagtgggatgagatccacgag
acggagcggcgggcgctgccggagttcttcggcggcgccggggggagcgggttcgggacg
gcgtcgcggaacccgcggatctacagggagtaccgcgactacatcatcagcaggtaccgc
gaggacacctcccgccgcctcaccttcaccgaggtccgcaaggcgctcgtcggcgacgtc
acgctcctccggaagctcttcgccttcctcgactcctcgggcctcatcaacttctccgcc
tccccctcccgccccgaggcgcagcagcagcagcggcagacggaggcggaggccgtcgtg
gaggcgcccgtggggctgcaggtgacgccacggccgccgccgtcgtacttcgcggaggag
aagggaggagggggcaacgagaacggattccgtttgccgccgctgacctcgtatagtgat
gtatttggagagtgggcgcctgggatggcgcctatatgtgggctctgtggcatggagtgc
agagacgggaatgcccaaatattgaaggatggttttaaagtatgctcaaaatgttatgcc
aataatgataataagggtgaagcaaatatacatccaggtgacaaaaaggagcggatcgac
aatcattcttctagtgcatggacagatgcagaaactctccttctcttggaaggtgtacta
aaacatggagatgactgggatctcatcgcccagcatgtccgcacaaagaataaatcagaa
tgcattgcaaggctaattcagttgccttttggtgaacatatgctgggcacagtaaatggt
aaattggataacagactccataaaatccaaacaaccgatggaaaagtgaacaagtccact
gtgaaggagtcttcaagtcaaccaactgaaacagttgatgacatgcagattgatggaaat
gaagatggcgctgataaatctgttgaagaacatcctacaaaacatagacggttgttttct
tcaatagatatcactgtctcattaatggagcagttagcgcatcttaccacatcgacaagc
ccagatgttgttgctgcagctgctgatgccgcaattaaagcactgggtaatgaaaacccc
caagcaaggagagcttttcaactcagtgagaaagagtaccaaaccagggcattctcttct
aaccatgcccggcagagtgatgatgttggtggtggtgatcgggatgtagaaatgcacggg
cacccagataaaaagcaggggaagatgtttatttctaccacatatcaagtaagggcagct
gttgctacgtccataggtgtagctgctgcccgtgctaaaatgcttgcagaccaggaagaa
cgggaaatggagctcctaatggcgtccataatagaaactcagctaaaaaagatccaatac
aagatcaaacactttgaggagctagagttgatcatggatcaggaatacgctactctacag
caaatgaagtcttcccttgtcgatgaatggcaaaaggtcctcaagcgagcatttgagact
ggagtaccaatatcgagggatgaagtgcttataaagttgttccaaaacaagccaaatctg
tag
DBGET
integrated database retrieval system
