Oryza sativa japonica (Japanese rice) (RAPDB): Os04g0520000
Help
Entry
Os04g0520000 CDS
T02163
Name
(GenBank) Nucleic acid-binding, OB-fold domain containing protein
KO
K03679
exosome complex component RRP4
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os04g0520000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os04g0520000
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Os04g0520000
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Os04g0520000
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP4
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-ProteinID:
BAF15246
RAP-DB:
Os04g0520000
UniProt:
A0A0P0WCP7
LinkDB
All DBs
Position
4
Genome browser
AA seq
315 aa
AA seq
DB search
MRDLQLSLNQTQRVRLEAALHELQTVAPAAAVTVADTIPVNDEDNILKGHGTSDQDGEVV
ATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWRLEINFSQDAVLMLSSM
NLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGSLHLQARSQKYGKLERGQLLV
VPAYLVKRRKQHFHHLEQYDVDLILGCNGFIWVGEHVVVGENANMMENKLNLSAEVENFT
PLETRKHICRLANAVRVLSALGFTLTVELIIETAEASVSSNIEINNMLGAEFYVQTAERE
VKRRADLLRKKSGAR
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgagggacctccagctctcgctgaaccagacccagagggtgcgcctcgaggccgcgctc
cacgagctccagaccgtcgcccccgccgccgccgtcaccgtcgcggacaccatccccgtc
aacgacgaggacaacattctcaaggggcatgggacgtcggatcaggacggggaggtggtg
gcgacgctgtgcggcgtggtggagcgggtcaacaagctggtgtacgtgcggacgcttagg
gcgaggtataagccggaggttggtgatatcatagttggccgtgttattgagattgcacct
aaacgctggaggttggagataaattttagccaagatgctgttttgatgctttcttctatg
aatttacccgatggaattcagagaaggagaactgctgtcgatgaacttaatatgcggaca
atttttgaagaaaatgatgttatctgtgctgaagttcgtggtttccaacatgatggatct
ctgcacctacaagcacggagtcaaaagtatggaaagcttgagaggggtcaactgcttgta
gtacctgcatacttggtaaaacgacggaagcagcatttccaccacctcgagcaatatgat
gttgacttgattcttggttgcaatggattcatctgggtaggtgagcatgttgtggtaggt
gaaaacgctaatatgatggaaaataagctgaatttgagtgctgaagtggagaatttcact
ccactagaaacaaggaaacatatttgccggcttgccaatgctgtacgtgtgctttcagct
ctgggtttcactttgacagttgaactgataattgagactgctgaagcaagtgtatcatca
aatatcgagataaacaacatgcttggggctgaattttatgtccagacagcagagagagag
gtaaaacgtcgagctgatctgttgcgaaagaaaagtggagcaagataa
DBGET
integrated database retrieval system
