Oryza sativa japonica (Japanese rice) (RAPDB): Os04g0595300
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Entry
Os04g0595300 CDS
T02163
Name
(GenBank) Zinc finger, RanBP2-type domain containing protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Os04g0595300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os04g0595300
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
Os04g0595300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
GTP_EFTU_D4
MMR_HSR1
PBP1_TM
Zn_ribbon_RanBP
DUF7130
Motif
Other DBs
NCBI-ProteinID:
BAF15647
RAP-DB:
Os04g0595300
UniProt:
B9FC91
LinkDB
All DBs
Position
4
Genome browser
AA seq
656 aa
AA seq
DB search
MPRKVVSGPDYDDEYDDDYDEYDEDYDDYGETGHSDDIQHPVKEEKESSKKSSSTVPVLW
RCSMCMFDNHESMVYCEMCGVFRESFMKSAKDGSIKVHGIPSDFGTPSMPKSDCTKMPVN
TRTTDFDGDPEIKNASISHEKVGSTQYTSAGSSSGAGKKLKEDQSSRASSSAQNEDVAQK
LSSDIQKLGLEKNEVDTAKPYLPEEYKPEKWMFANEESGVLSQLNLAIVGHVDSGKSTLS
GRLLHLLGRISKKDMHKNEKEAKEKGKGSFAYAWAMDESSEERERGVTMTVAVAYLETKK
YRVVLLDSPGHKDFVPNMISGATQADAAILVVDACTGSFEAGMDGEGGKSVGQTKEHAQL
IRSFGVEQLIVAVNKMDAIGYSKERFEFIKVQLGSFLRSCNFKDSSVTWIPLSAVENQNL
IKIPSDVRLTSWYQGFCLLDAIDSLQLPSRDVSKPLILPICDVIKSQSTGQFAAFGKLET
GAIRIGSKVLISPCGEVAAVKSIERDSNSCDIARAGDNVAVSLQGIDGSKLILGGILCNP
GFPVPVSNFLELRVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDKAGKPSKTAP
RFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVVTRVLRQDQN
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgccacgcaaggttgtctctgggcctgactacgatgacgagtacgacgatgactatgat
gagtatgatgaggactacgatgattacggtgagaccgggcacagtgacgacattcagcac
cccgtgaaggaggagaaagagtcatcgaagaagtcctcaagtacggtgcctgtgctttgg
agatgctccatgtgcatgttcgataatcatgaaagcatggtgtattgtgagatgtgtggg
gtttttcgagaatcctttatgaaatctgccaaggatggttcaataaaagtccatgggata
ccaagtgattttgggacaccttcgatgccgaaatctgactgtaccaagatgccagtgaat
actcgtactacagactttgatggtgaccctgagataaagaatgctagcatatctcatgag
aaagttggttccacgcagtacacatctgctggtagctcatcaggcgctgggaaaaagctg
aaggaggaccagagtagtagggctagcagttctgcgcagaatgaggatgtggcccagaaa
ctttcttctgacatacagaagctaggtttagaaaagaatgaagtagatactgcaaaacct
tatttacctgaagaatataagcctgagaagtggatgttcgctaatgaggaatcaggagtg
ctgagccaactaaaccttgcaatagtaggtcatgttgattctggcaagtcaacactctct
gggagactgctacatctgttaggaaggatatcgaaaaaagatatgcacaagaatgagaag
gaggctaaagaaaaaggaaaaggatcatttgcttatgcgtgggctatggatgaaagcagt
gaagaaagagaaagaggcgtgacaatgactgtggccgtggcttatttggagactaagaag
taccgtgtagttttgcttgactctccaggccataaagattttgtaccaaatatgatatct
ggcgcaacgcaagctgatgcagctattcttgttgttgatgcttgcactggttcatttgaa
gctggcatggacggtgaaggagggaaaagtgttggccagacaaaagaacatgctcagctt
attagaagcttcggcgttgaacagcttattgttgcggtcaacaagatggatgccatcggc
tactcgaaagaaagatttgagttcatcaaggttcaacttggtagttttctgcggtcatgc
aatttcaaagattcatctgttacctggattcctcttagtgctgttgaaaatcagaatttg
atcaaaattccttctgatgtccgtttaacttcctggtatcaaggattttgtctcttggat
gctatagattccttgcagcttccatctcgggatgtttcaaagcccctcattcttcctatc
tgtgatgttatcaagtctcagtcaacagggcagtttgcagcctttggaaaattagagact
ggagctattcgaattggttcaaaggttttaatttcaccttgtggggaagtggcggcagtg
aaatccatcgagcgggattcaaattcatgtgacatagcaagagctggtgataatgtagcg
gttagtttacagggtatcgatgggagtaagctaatactaggtgggattctttgcaaccct
ggtttcccagtgcctgtctctaacttcttggagctaagggttctagtgttagacgtcacc
attcctatccttattggctatcaggtcgaatttcacatacatcatgtgaaggaggctgcg
agggttacgaaaatcgtggcattgcttgacaaggctggcaaaccaagcaaaactgcacct
cgttttcttaagtcaaagcagaatgcagttgtgcaggttaccttagacgctccggtctgt
gttcaagaattctccaaatgccgagctcttggcagggcattcttaaggtcttctggaagc
acgatcgctgttggagtcgtaacgcgggtactccggcaagatcagaactga
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