KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os04g0641000
Entry
Os04g0641000      CDS       T02163                                 
Name
(GenBank) Similar to DNA-directed RNA polymerase, subunit B (RNA polymerase IV second- largest subunit)
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Os04g0641000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dosa03021]
    Os04g0641000
Enzymes [BR:dosa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Os04g0641000
Transcription machinery [BR:dosa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     Os04g0641000
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-ProteinID: BAF15955
RAP-DB: Os04g0641000
UniProt: Q0J9N2
LinkDB
Position
4
AA seq 1270 aa
GFALRRRPSSPPGYSLEVMEEPSKDNGQSSCVVDPELEPMMLDDAREGVSHTLDDANGHS
SMDVDRGCHSMDTTRSSLGDDGKGKRDSYAQIPVDMSIPSLEKFCKEASRSFFDEIGLIS
HQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSNRGPGGWRHAIIKFGRVQLEEPVFWSH
GCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQVYSMEKSDKAKTGNDKFGYKRNIINE
TYYINIGRLPVMVMSNLCWLHKLKESDCQFDSGGYFLIKGMEKVFIAQEQKCLTRIWVED
RPCWMVSFLSPIRRRRIYIKLIDSANNEDASGGKIISISFLYANMPIWLMFFALGISSDK
DIFDVINMEDCDACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDD
YIAKYLFPSISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELR
AHIRHAERLMVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCA
GIVATLRRTNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVK
NLAVTATVSSRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSCSDPASFVL
RLRCMRRSGLIDPQVEIKRDKHQREVRVFSDAGRILRPLLVVENLNKIRRPKGSSYSFQW
LMQQEIIEFIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNVKRKIGGEVSGYT
HCELDLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYY
PQRPLFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNRAS
LERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVG
ASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLG
DKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIAL
GGTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIH
MAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDF
SQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMG
ICLRFETEVC
NT seq 3813 nt   +upstreamnt  +downstreamnt
ggtttcgccctccggcgacgcccctcctctccaccaggctattccctcgaagttatggaa
gagccatcaaaggacaatgggcaatcatcctgtgttgttgatcctgagctggaacctatg
atgctggatgatgctagagagggagtatcccatacattggatgatgcaaatgggcattct
tctatggatgttgacagaggatgccattctatggacaccacgagatcatctctgggtgat
gatggtaaaggaaagcgcgactcatatgcccaaattccagtcgacatgagtattccaagc
ctagaaaagttctgcaaagaagcatcaaggtccttctttgatgagattggtctgatcagc
catcagataaattcttataacgagtttgtctcacatgggctccaggaactttttgattct
ctgggggaagtgactgtggagcctagttatgatccttcaaatagaggaccaggtggctgg
agacatgctatcatcaagtttggaagagtgcaactagaagaaccagtattttggtctcat
ggatgtgatattgatgaacaatcgctcaaactgaagccaaggcatgctcgcctacagaat
atgacatattcttccaaaatgaaagtggaagttcatttccaggtttactctatggagaag
agtgacaaggctaaaacagggaatgataaatttggttacaagcgaaacattattaatgaa
acatattatataaatattggccgccttccagttatggttatgtcaaatttatgttggctc
cacaaactcaaggaaagtgattgccaatttgattctggtggatactttttgatcaaggga
atggagaaggtattcattgcgcaagagcaaaaatgtctgaccaggatttgggttgaggac
cgtccttgctggatggtctctttcttgtctccaatcagaagaaggcgcatatatataaaa
ctaattgattctgcaaataatgaagatgccagtggggggaagatcatttccatctccttt
ttgtatgcaaatatgccaatatggttgatgttttttgcactaggcatatcatcagataag
gatatctttgatgttataaatatggaagactgtgatgcttgtgttatcaacacaattacc
gcaactattaaagaatcagatgaattgtgtgaaggcttccgtaaatcagataaagcccgg
cagtatgttgacgaattgattaagaattcaaaatttcctcctgcagagccatttgatgat
tatattgctaaatacctcttccccagcataagtgggaaccggaacaaagcacttttctta
ggttacatggtcaaatgccttttaatggctttcactgggaagcgcaaatgtgacaacaag
gatgatttccggaacaagaggttggacctagctggtgaattgcttggaagagaactccgt
gcgcatattaggcatgcagagagactcatggttaaggccttgcagagagatttaaatagt
gagcgtgagttacaagaatttgatcattatctggatgcttcaattattaccaatggtcta
aaccgtgccttctctactggttcttggtgccatccttacaaaagaaatgaaagatgcgca
ggaattgttgcgacactaaggagaacaaatccgcttcagatgatctcggacttgaggaaa
actcgccaacgagttgcttatgctgggaaagccggtgatgcaagatatccaaatccatcc
tactggggaaaattgtgttttatgtccactcctgatggtgaaaactgtggacttgtgaaa
aatctagctgttacagctactgttagctccagagtagcaccgccattgattgacaggttc
atttcttgtggaatgaataagctgcatgagattcctacagaggaggttcctagaatggat
aaaatcttcctgaatggggattgggtggggtcctgtagtgacccggcttcatttgtcttg
cgtttaaggtgcatgagacgcagtggtctgatagatccacaggttgagataaaacgggac
aagcaccaaagggaagttcgggtgttttctgatgcaggtcgaatcctcagaccgcttctt
gtggttgaaaatctcaataaaattaggagaccgaagggcagttcatattcttttcagtgg
ttaatgcaacaagaaataattgagtttattggcgttgaagaagaggaagatatacgaagt
gcctggggcatcaggaacctatttgagagtgaagaagaggctcccatggtaaaaatgaat
aaagcagaggatgtcttcaatgttaagaggaagatcggaggggaggtttcaggttatacg
cactgtgagctggatctttcttttctgctaggattaagttgtggtattatcccttttgcg
aaccacaattttgctcggagggttctttaccaatctgaaaaacattcacagcaagctatt
ggatactctacaacaaatccgcacatcagagttgataccctttcccatcaactttactat
cctcagagaccccttttcaaaacagtgatagctgactgcattggtagatcagaatatact
tttgggagaaaggatgactttgccagaccagagtatttcaatggccaaaatgcaatagtg
gcagtgaatgttcatcaggggtttaatcaagaagattccgtggttatgaatagggcttct
cttgagcggggtatgtttaggactgagcacttcaggaactataaggctgaagtagagaac
aaaggtgggccaggtggcaacaaacgactaaaaatgaaggataagattgacttcggtaaa
atgcaaagcaagagaggacgtgttgacaatcttgacgatgatggattaccatatgtcggt
gcaagtcttcagagtggtgacattgtcattggaaaggtctcagaatctggtgaagatcat
agtattaagctgaagcatactgaaaagggtatggtgcagagggtattactttcagctaat
gatgaggggaagaactttgcagttgttactctaagacaggttcgatcaccttgccttgga
gataaattttccagcatgcatggccagaaaggtgtcgttggttttctagaatctcaggag
aatttcccatttacttaccaaggaatagtaccagatattgtgataaatccacatgcattt
cctacccgtcaaactccaggccagcttcttgaagctgctttggggaaaggaattgccctc
ggtggtacaatgagatatgctacaccattcacaacagcatcgtttgatgtgatcacagac
caattacacaaggctggattttcaagatggggagctgaaagtgttctcaatggccggact
ggtgaaaggatgcactcattgattttcatgggtcctactttttaccagaggctgatacac
atggcagaagataaggtcaagttcaggaacacggggccagtgcaccccctaacacggcaa
cctgttgctgacaggaagaggtttgggggagtgaagtttggagaaatggagcgtgactgc
ctcctcgcccatggtgcagcagccaacctccatgagcggctcttcatgcttagtgacttc
tcgcagatgcacgtctgccagacgtgcgaacgtgtggcgaatgttatcatgaggcctgtc
ccaggaggaaagaagatccgggggccatactgtgggttctgccgctcttctgaaaacata
gtaaggatcaatgtgccctacggcgcaaagctgctctatcaagagctattcagcatgggg
atctgccttagatttgagacggaagtctgctag

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