Oryza sativa japonica (Japanese rice) (RAPDB): Os04g0677800
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Entry
Os04g0677800 CDS
T02163
Name
(GenBank) Zinc finger, RanBP2-type domain containing protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Os04g0677800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os04g0677800
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
Os04g0677800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-ProteinID:
BAF16182
RAP-DB:
Os04g0677800
UniProt:
A0A0N7KJX6
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Position
4
Genome browser
AA seq
682 aa
AA seq
DB search
MFIPELDNRSDPQEPSRNPGIWQCTICEHGNDAKKKSCEQCGVLRYFSLYFNNALEVDGR
AKRRDKHYAVSVLARTLFSPSSAKSKDVVLSGGFKASRNATGSTRATLDALHKTYMTRKE
RHINIVPFKFDTPSPDDVVATGLKSSRSFRKVDTDAPHVTEKRVMDNDSSTPEKDTTADS
NLPVKSNEFGESSESVSVGSQNETLCLDHELQHLSLERKSQKSKANIKKPVSSSLYKPEP
WMLQHEDEGIPRQLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHKYEKEAKEKGKGSF
AYAWAMDESADERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAIL
VIDASIGSFEAGMGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVEYSKERFNFIKSQL
GAFLRSCGYKDSAVAWVPISAMENENLMTTASDTRLSSWYDGNCLLKAIDTLPPPSRDVS
KPLRLPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLA
RAGDNVAIGLQGIDPSHIMPGGVICHPDYPVSVASCLELKILVLDITVPILVGLQFELHI
HHAKVSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGR
VFLRSQGNTIAVGIVSRVREQA
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtttattcctgaattagataaccggtctgatcctcaggagccatcaagaaatcctggc
atttggcaatgcaccatttgcgaacacggaaatgatgcaaaaaaaaaatcatgtgagcaa
tgcggtgttcttcgatatttctcgctgtatttcaataatgcccttgaagttgatggcaga
gctaaacggagagacaagcattatgcggtatctgtactggcaagaactcttttctcacca
tccagtgccaagtcaaaagacgttgttctttctggtggctttaaagctagcagaaatgca
acaggaagtacacgagctacgttggatgcgctgcataagacatacatgacccgtaaagaa
cgccacattaacatagtgcctttcaagtttgatacaccatctccggatgacgtggtcgct
acaggactaaaatcgtcgagaagttttagaaaagttgacacagatgctccccatgtcact
gaaaagagggtgatggataatgatagttctacacctgagaaggatacaactgcagactca
aatttgcctgtaaagtcgaatgaattcggtgaaagtagtgagagtgtttctgttggtagt
caaaatgaaacactttgcttggaccatgagctacagcatttgagtttggagaggaagtca
caaaaaagtaaagccaatattaaaaagccagtttcttcatccctgtacaagccagaacca
tggatgctccagcatgaagatgaaggcatccctagacaattaaatcttgctattgttggc
catgtcgattctgggaaatcaactctatgtggtcgtttgttacatgccctggggaggatt
tcaaaaaagcaaatgcataaatatgagaaggaagctaaagaaaaggggaaaggatcattt
gcatatgcttgggcaatggatgagagtgctgatgaaagggagcgtggcattacaatgact
gtcggtgttgcatactttgacaccaaaaattaccatgttgttttgctggactcccctggc
cacaaagattttgttcctaatatgatatctggagcaacacaatctgatgcagctatccta
gttattgacgcttctataggatcatttgaagcaggtatgggcatcaatgggattggacag
acaaaggagcactcgcagcttgttagaagctttggcgtggataacttgatagttgttgtt
aacaagatggactcggtggaatattcaaaagagcgatttaattttatcaaatcacagctt
ggtgcttttctgcggtcatgcggttacaaagactcagcagttgcctgggttccaattagt
gcaatggagaatgagaacttaatgacaacagcttcagatactcgactatcatcatggtat
gatggaaattgcctgttgaaagccattgacacattaccgcctccttctcgtgatgtttca
aagccactgcgccttccaatttgtgatgtcttttcgtcacataagctggggcaagttgca
attggtggtaaagtagaggttggagcaacccgaagtggttctaagatcctcgtcatgcct
tttggggagttagctgtggtgaaaactattgagcggaattcctctagttgcaatttagca
agagctggggacaatgtcgctattggtttgcaagggattgaccctagtcatatcatgcct
ggcggagtcatatgccatccagattatcctgtgtccgtggcttcttgcttggagctaaaa
attttggtcctagatatcactgtaccaatactggttggcttgcagtttgagctccacatc
catcatgcgaaggtgtctgcaagcatggtgaaaatactgtcattgctggagcagaagacc
ggcaaagcctcaaagaagataccacgatttctcacctcgagacagactgctgtaatcgag
gtgaagctggagaaagaggtatgcgtggaagaattctcaaacctgaaagcgctaggccga
gtgttcctacgatctcagggaaacaccatcgcggttggcattgtgagccgagtacgagag
caggcttag
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