Oryza sativa japonica (Japanese rice) (RAPDB): Os04g0680000
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Entry
Os04g0680000 CDS
T02163
Name
(GenBank) Transcription factor Tfb2 family protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03022
Basal transcription factors
dosa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Os04g0680000
09124 Replication and repair
03420 Nucleotide excision repair
Os04g0680000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dosa03021
]
Os04g0680000
03400 DNA repair and recombination proteins [BR:
dosa03400
]
Os04g0680000
Transcription machinery [BR:
dosa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Os04g0680000
DNA repair and recombination proteins [BR:
dosa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Os04g0680000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-ProteinID:
BAF16198
RAP-DB:
Os04g0680000
UniProt:
Q0J8Y9
LinkDB
All DBs
Position
4
Genome browser
AA seq
444 aa
AA seq
DB search
MPQVMVVARNFMDMVAALPAAKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVSAPVAA
AAMEEWVLDEYAAKHRVAIDRLLQLRVFVEVRDRRKEVSYKMNQKFQGNMQKYLVDGGSL
PREPIPSSVTARLPTLAELESFALEQWEVRMTKAYVCISYCLNATNVHSPSKGTHSFLYG
KIVLLAAIDQLISSRERDKFQLIHDENFSARSSEFKLMETNAQLWYIMREYISSAEERGV
DPTELISFLLELSFHTLGEAYSLNTLTDVQRNAIRDLAELGLVKLQQGFVVVETNFRMYA
YSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYGAFENGITAEQIISFLQQNAHPRVA
DKIPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAK
KMRLIVRVEFHSEMHDYSVQERSD
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtaatggtggtcgcgcggaacttcatggacatggtggccgcgctgccggcc
gccaagctcgacatgctctacgactccgccttcatctgcgaggccgtgctcaggtcgctc
ccgccgctcgcgaagaagtacgcgctgcagatgctgtacgtgtcggcgccggtggccgct
gcggccatggaggagtgggtgctcgacgagtacgccgccaagcacagggtcgccatcgat
aggctgctccaactgagggtatttgtcgaggtgcgcgatcgaagaaaggaggtgagctac
aagatgaaccagaagttccagggcaacatgcaaaagtatttggttgatggtggaagttta
ccaagggaacctataccatcgagtgtcactgcaaggttgcctacattggcagaattagag
tcttttgctcttgagcagtgggaggtcaggatgacaaaagcttatgtttgcatatcgtac
tgtttgaatgctaccaatgttcactcccctagtaaaggaactcattcttttctctatggg
aaaatagtgcttcttgctgcaattgatcaactcatctcaagtcgagagagggacaagttt
cagctcatccatgatgagaacttttcagcgaggtcttctgagttcaagctgatggagaca
aatgctcaactttggtacatcatgagagaatacatctcatcagcagaggaacgtggtgtg
gaccccacggagttgatatcatttctattggaacttagttttcatacattaggagaggct
tatagcttgaatactctgaccgatgtccaaagaaatgctattagggatctggcggagttg
ggactggtcaaacttcagcagggttttgtagttgtggagacaaatttccggatgtatgcg
tactcaacttccagattacattgtgaaattctgcgccttttttcaagagtggagtatcaa
cttccaaacctaattgtgggatctattacaaaagaaagtctttatggtgcttttgagaat
gggattaccgctgaacagataatttcattccttcagcagaatgctcatcctcgtgttgct
gacaagatacctgcagtcccagagaacgttacagatcagattaggttgtgggaaacggat
cgtaacagggttgatatgaccctatcgcatttatatgaagattttccaagcaaggatatg
tttgatcaatgctgtgattatgcaagagatcatgggtgcttgctgtgggaggatgcgaag
aagatgagattaattgtacgagtggagttccattcagaaatgcatgattactccgtgcaa
gagaggagcgattag
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