Oryza sativa japonica (Japanese rice) (RAPDB): Os05g0140500
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Entry
Os05g0140500 CDS
T02163
Name
(GenBank) Similar to RNA binding motif protein 8B-related
KO
K12876
RNA-binding protein 8A
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03013
Nucleocytoplasmic transport
dosa03015
mRNA surveillance pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os05g0140500
09122 Translation
03013 Nucleocytoplasmic transport
Os05g0140500
03015 mRNA surveillance pathway
Os05g0140500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os05g0140500
03041 Spliceosome [BR:
dosa03041
]
Os05g0140500
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Os05g0140500
Spliceosome [BR:
dosa03041
]
Complex C
Other components
EJC/TREX
Os05g0140500
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_3
Troponin-I_N
Motif
Other DBs
NCBI-ProteinID:
BAF16512
RAP-DB:
Os05g0140500
UniProt:
B7FAL5
LinkDB
All DBs
Position
5
Genome browser
AA seq
158 aa
AA seq
DB search
MAAVTNADVEAVDFDPDDDDLMDEDAADPTPAPAPRLRSTIAGGGGGGGGGDDGQRKTKG
RGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPVRSIEGWIVLVTGVHEEAQEDDLHNI
FRDFGQVKNLHLNLDRRTGFVKVCLFQYCNVSSPVAAL
NT seq
477 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggtgaccaacgccgatgtggaggcggtcgacttcgaccccgatgacgacgac
ctcatggacgaggacgccgccgaccccacgccggcgcccgccccgcgcctccgctccacc
atcgcgggcggcggcggcggcggcggcggcggcgacgacgggcaacgcaagaccaagggc
cgcgggttccgcgacgacgccgcgccccgcgactcccgcttagccggcgccgggcgcgcc
tccgacttcgactccctcggctccgacggtggccctggccccgtccgatccattgaagga
tggattgtgctagtcactggggttcatgaagaagctcaggaagatgatcttcacaatatt
ttccgggactttgggcaggtcaagaacttgcatttgaatttggatcgccgaactggattc
gtgaaggtttgtctttttcaatactgcaatgtgtctagccctgttgcagccttgtaa
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