Oryza sativa japonica (Japanese rice) (RAPDB): Os05g0144800
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Entry
Os05g0144800 CDS
T02163
Name
(GenBank) Similar to TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2)
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03022
Basal transcription factors
dosa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Os05g0144800
09124 Replication and repair
03420 Nucleotide excision repair
Os05g0144800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dosa03021
]
Os05g0144800
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os05g0144800
03400 DNA repair and recombination proteins [BR:
dosa03400
]
Os05g0144800
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Os05g0144800
Transcription machinery [BR:
dosa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Os05g0144800
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Os05g0144800
DNA repair and recombination proteins [BR:
dosa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Os05g0144800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
NAMPT_N
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BAF16541
RAP-DB:
Os05g0144800
UniProt:
B9FME3
LinkDB
All DBs
Position
5
Genome browser
AA seq
758 aa
AA seq
DB search
MKFDLEGLTVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTSALISLITSYS
LASPSRPLRLIYCTRTVHEMEKTLAELRLLFAHLPAAASRSLLALGLSSRKNLCVHPQAS
AAAARDSVDTACRRLTASWVRDRAASDPDSTPLCDFFESFDRAAAAGDLASYMPPGVYTL
ADLRALGRDRGICPYFLARQMVKYANVVVYSYQYLIDPKVASIVSREMQKECVVVFDEAH
NIDNVCIEALSVSIRKQTLEGAERNLRRISQEIDRFKATDANRLRAEYNRLVDGLAQRGN
LPISDAWLANPALPEDILKEAVPGNIRRAEHFLAVLRRLVRFLDGRLETENVENEMPVAF
VASIHSQAGIDQKMLRFCYDRLHSLMLTLEITDTDEFMHIQTICDFATLIGTYTRGFSII
IEPYDERMPDIRDPVIQLSCHDASLAIQPVFERFQTVVITSGTLSPIDLYPRLLNFNPVI
SRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASAVPDGIVC
FFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAIFF
SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDAL
RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLHDAHLNLSTDMALHIA
REFLRRMAQPYDKTGSGGNKTLLTEEDLQNMAQDAMEM
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcgacctggagggcctgacggtgcacttcccgtacgcggcgatctacccggag
cagcacgcgtacatgggcgagctgaagcgcgccctcgacgcgcgcggccacgcgctgctc
gagatgccgacgggcaccggcaagacgtcggcgctcatctccctcatcacctcctactcc
ctcgccagcccgtcccgcccgctccgcctcatctactgcacccgcaccgtccacgagatg
gagaagaccctcgccgagctccgcctcctcttcgcccacctccccgccgccgcctcccgc
tccctcctcgccctcggcctctcctcccgcaagaacctctgcgtccacccccaggcctcc
gccgccgccgcccgcgactccgtcgacaccgcctgccgccgcctcaccgcgtcctgggtg
cgcgacagggccgcctccgacccggactccaccccgctctgcgacttcttcgagtccttc
gaccgcgccgccgccgccggtgacctcgcctcctacatgccccccggcgtctacaccctc
gccgacctccgcgccctcggccgcgaccgcgggatctgcccctacttcctcgcgaggcag
atggtcaagtacgccaatgtcgtggtctacagctaccagtacctgattgatcccaaggtg
gccagcattgtgtccagggagatgcagaaggagtgcgtcgtcgtcttcgacgaggcgcac
aacatcgataatgtctgcattgaggctctcagtgtcagcatccgcaagcagacgctcgaa
ggtgccgagcgaaacttgcggcgcatctcgcaagagatcgataggttcaaggccactgat
gccaataggcttcgtgctgaatacaacaggctggttgatggattggcacagaggggaaac
ctgccaatatcggatgcttggctcgcgaacccggccttgcctgaggacattctgaaggag
gctgtaccaggaaacatcaggagggctgagcattttcttgctgttttgcggaggcttgtc
aggttcctagatggacgcctggaaacagagaatgttgagaatgaaatgcctgttgccttt
gttgcttcaatccattcccaggctggaattgaccagaaaatgttaaggttttgttatgat
cggctacactctctaatgcttaccttggagataaccgatacagatgagttcatgcacatc
cagacaatttgtgactttgccacattgattggaacttatacacggggcttttctataata
atagaaccctatgatgagagaatgcctgatatccgtgatcctgtgattcagctcagttgc
catgatgcatcgcttgcaatacagcctgtttttgagcgttttcaaacagtagtcataact
tctggtactctcagcccaatagacctctaccctcgccttttgaactttaatcctgttata
agcaggagcttcacaatgtctttaacaagggattgcatatgtcccatggtcttgacaaga
ggaagtgaccagctacctgtcagtacaaagtttgatatgcgtagcgatcctggcgttgta
aggaattatggtcggctcttgctggagatggcttctgctgtgccagatggcatagtttgt
ttttttgtcagttactcttatatggatggcattgtcaacagctggaatgagatgggtatt
ttgcaggacatcatgcagcataagttggtattcattgaaacaccagatgttgttgagaca
acattggctcttgataattacagaaaggcatgtgattgtggaagaggtgctatattcttt
tccgttgccaggggcaaagtagccgaaggtattgattttgatcgacactatggcagactt
gtgatcatgtttggtgttcctttccagtacacactcagcaggatattacttgctaggttg
gagtacctaagagaaacttttcaaataaaggagggtgacttcctgaccttcgatgctttg
aggcaagctgcgcaatgtgttggccgtgtgatccgttctaaagcagattatggaatgatg
atatttgctgacaagagatacagtcgccatgataaacggtctaaactgcctgggtggata
ctgtcacacttacatgatgcgcacctaaatctgagcactgatatggctttgcatatagct
cgtgagttcctacggaggatggcgcagccttacgataagacggggagcggcggcaacaag
actctcttaaccgaagaggatttgcagaatatggcgcaggacgccatggagatgtga
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