Oryza sativa japonica (Japanese rice) (RAPDB): Os05g0151000
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Entry
Os05g0151000 CDS
T02163
Name
(GenBank) Similar to RNA polymerase II largest subunit (Fragment)
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03020
RNA polymerase
dosa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Os05g0151000
09124 Replication and repair
03420 Nucleotide excision repair
Os05g0151000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dosa03021
]
Os05g0151000
03400 DNA repair and recombination proteins [BR:
dosa03400
]
Os05g0151000
Enzymes [BR:
dosa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Os05g0151000
Transcription machinery [BR:
dosa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
Os05g0151000
DNA repair and recombination proteins [BR:
dosa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
Os05g0151000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF7069
CCDC-167
PspA_IM30
Motif
Other DBs
NCBI-ProteinID:
BAF16584
RAP-DB:
Os05g0151000
UniProt:
Q0DKN9
LinkDB
All DBs
Position
5
Genome browser
AA seq
1834 aa
AA seq
DB search
MDAARFPYSPAEVAKVEAVQFGVLSPDEIRQMSVVHIEHAETMEKGKPKPGGLSDPRMGT
IDRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDI
KFKQALKIRNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKRGGCGAQQPNIT
VDGMKMVAEYKAPKKKNDDQEQLPEPVDRKQILSAERVLNVLKHISDEDCLLLGLNPKFA
RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD
TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQI
NLIRFSGWHSEAETRFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQ
LEAEAGRTTMESFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQM
TACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQ
KLDSLKMKKAEFDNVFRYELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRF
QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVV
PGDDDISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHL
KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDED
IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI
TNDEAQKGEIQDEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDGFK
TEKGWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD
PLRGVSENIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISG
TPYHQGMMSPSYLLSPDIRASPTAADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPP
VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSP
SSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTS
PSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
SAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYS
PTSPSYSQPSPSYSPTSRVEEEAHEEAEEEEPKR
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgcgaggttcccgtactcgccggccgaggtggccaaggtggaggcggtgcag
ttcggcgtcctcagccccgacgagatcagacaaatgtcggtggtgcatatagagcatgca
gagactatggaaaaggggaagcccaagcctggtggcttgagtgaccctcggatggggaca
attgaccggaagatcaagtgtgagacatgcatggctgggatggcagagtgcccaggccac
tttggccaccttgagcttgctaagccaatgttccacatcggcttcatcaagactgtactc
tccataatgcgctgcgtctgcttcaattgctccaagatccttgcagatgaggatgatatc
aagttcaagcaggctcttaaaatcaggaatccaaaaaataaactaaaaagaatatatgat
gcttgcaagaacagaaagatctgtgcaggcggtgacaatcttgatgttcaggagcaacaa
ggtactgatgatccagtgaagaaaaggggtggctgtggtgctcagcagccgaatatcact
gttgacggtatgaagatggttgcagagtataaagcaccaaagaagaaaaacgatgaccaa
gagcaactccctgaacctgtggaccggaagcaaatcctctctgctgagagggtccttaat
gttcttaaacatataagtgacgaggactgtcttctattgggtctgaaccccaaatttgcc
cgtcctgattggatgattttgcaagtccttccgattcctccaccccctgtgagaccatct
gtaatgatggatacttcttccagaagtgaggatgatttgactcatcaattagcaatgata
attcgacacaatgagaacttgaggaggcaagagagaaatggagccccagctcacataata
acagagtttgctcagttattgcaattccacattgcaacatactttgacaatgaacttcct
ggccagccaagggccacacagcgatctggaaggcctattaaatcaatttgcagcagactg
aaagcaaaggaaggccgcattagaggaaacttgatggggaagcgtgttgatttctcagct
cgtactgtcatcacaccagacccgaatattaacattgatgaattgggagtgccatggagt
attgctttgaacctgacatacccagaaactgttactccatataacatcgagaggttgaaa
gaacttgtagaatatgggccccaccctccccctgggaagacaggtgcaaaatacattatc
agggaagacggtcagaggcttgatcttcgttatgtgaagaaaagtagtgatcagcatctg
gagctgggttacaaggtggaaaggcacctcaatgatggggattttgttcttttcaatcgg
caacccagtcttcacaaaatgtctatcatggggcatcgcattaaaatcatgccctattca
actttccgcttaaacttgtccgtcacttcgccgtacaatgcagattttgatggggatgaa
atgaatatgcatgttcctcagtcatttgagaccagagctgaagttctagagttgatgatg
gttccaaaatgtattgtgtctcctcaatcgaacaggcctgttatgggtattgtccaggac
acgcttcttgggtgtcgcaaaattactaaaagagatactcttattgaaaaggatgtattt
atgaacatcttaatgtggtgggaagattttgatggaaaggtccctgcccccgccattttg
aaaccaaggcctatttggactgggaaacaagttttcaacttaattattcccaagcaaatc
aatttgattagattttctggctggcattctgaagctgaaacaagatttattactcctggt
gatactatggtccggatagagaagggagagcttctatctggtacactttgcaaaaagaca
cttggaacatcaactggaagtcttattcatgttatttgggaagaggttggtccagatgct
gctcgcaagttcttaggtcatacacagtggctagtcaactactggcttctgcaaaatggt
ttcagtattggaattggggatacaattgcagatgcagccaccatggagaatattaatgag
acaatctcaaaagctaaaaatgatgtgaagaaacttattaagcaatttcgtgataaccaa
ttggaagctgaggcaggacgcaccacgatggaatcatttgaaaatagagtaaatgaggtt
cttaacaaggctcgtgatgttgctggaagtagtgccgagaagagtttgtctgaaagtaac
aatctgaaggctatggccaccgcaggctcaaaaggaactttcatcaatatttcacagatg
actgcttgtgtcggacagcagaatgttgagggcaagcggatcccatttggcttcaccaat
cgaacattgccccacttcacgaaaaatgactatggtcctgaaagtcgtgggtttgtggag
aactcttaccttcgaggcctgacaccacaagaatttttctttcatgctatgggtggtaga
gaaggtctgattgatactgctgtgaagacctcggaaactggatatatccagcgacgactt
gtgaaggctatggaagatatcatggtgaagtatgatggtactgttagaaattctttggga
gatgtcattcagttcttatatggagaagatggcatggatgctatttggattgagtcacag
aagttggactccttgaagatgaaaaaggctgagtttgataatgtatttcgttatgaactg
gatgatgagaactggaagccaaactacttgtcgactcaacatgctgaggatttgaagacc
atcagtgagattagaaatgtgtttgaggcagaggttcagaagctagaagctgaccggttc
cagcttggcactgagattgctacaactggtgataatacatggcctatgcctgtcaatctc
aagcggcttatctggaatgctcagaagacattcaagattgatctgagaaggccttctgac
atgcacccaatggaaattgtggatgcaatagataagctgcaagaaagacttaaggttgtc
cctggtgacgatgatatcagtattgaggctcagaagaatgcaactttgttcttcaatatc
ctgcttcgaagcacatttgctagcaagagggtcttgaaggagtacaggcttacaaaggaa
gcttttgaatgggttattggtgagattgaatcgagattccttcaatctttagtggctcca
ggtgaaatgatcggatgtgtagctgcacagtccatcggagaaccagcaactcagatgacc
ctgaatactttccattatgctggtgtcagtgccaagaacgttacccttggtgttcccagg
ctgagagaaatcattaatgttgctaagaatataaaaactccatcattgtcagttcaccta
aagcctgaggtgaacaagaagaaggaattggcgaagaatgtccaatgtgccttagagtac
actactctgcggagtgtgactcatgctactgagatatggtatgatcctgatcctctggga
accattattgaagaagatgctgaatttgtccagtcctactatgaaatgcctgatgaggac
attgaccctgataaaatttctccatggctgctgcgtattgagctgaatcgtgagatgatg
gttgataagaaattgagcatggctgatattgcagagaagatcaatcatgaattcgatgat
gacttgtcatgtatatttaatgatgataatgcagataaactgatccttcgtgtccggatc
acaaatgatgaagctcaaaagggagaaatacaggatgaatatggtgaggatgatgtcttc
ctcaagaagattgagagtaacatgttgacagagatggcccttcgtggaattccaggtatt
aacaaagtgtttatcaaagaggggaacgtcaataaatttgaggacaatgatggcttcaaa
acagagaaggggtggatgcttgatacagaaggtgttaatctcttggctgtcatgtgccat
gaagatgttgatgctactaggacaacaagtaaccatttgattgaagtaattgaggttctt
ggaatcgaggctgtccgccgagctctcttggatgagctgagggttgtcatatcttttgat
ggatcttatgtcaactacaggcatctggccgttctttgtgatacaatgacatacagggga
catctgatggctattacaaggcatggtatcaaccgtaatgacacagggcctcttatgaga
tgttcttttgaagagactgtggacatcttgcttgatgctgctgtatatgctgaatctgac
cccctgagaggtgtcagcgagaacattatgcttggccagcttgctcctataggtacagga
ggctgtgatctgtatctgaacgatcagatgctgaagcaggccatcgagcttcaactccca
agctatgttgaaggcctggactttggcatgatgacatcagcatgctcgcccatctctggg
acaccatatcatcaagggatgatgtcgccaagttacctgctgagtccagacatcagggct
tcccccactgcagcagatgctcagttctcgccgtatgttggaggaatggctttctcaccc
gtatcttcaccaggcaactacactccttcgtcagggggtggttacagtccatctcctccc
gtatgtactccagggccaggaagcttcacctcttcatcaccatataatcctgtctctcct
ttttactcgcctgccagtccattatcatgcccacttaccagtccgtcatatgtgcctacc
agtctaccacactcaccaacatctccaatatacagcgctacatctcctatctacagccct
tcatctcctatctacagccctacatcactaagttacagtcccacatcaccagtttatagt
ccgacttctcctgtatataacccaacttcttctgcatacagccccacatcaccatcttat
aaccctacatcgccgtcttacagttacagccccacatcaccatcttatagccccacatcg
ccgtcttacagttacagccccacatcaccatcttatagccccacatcgccgtcttacaat
tacagccccacatcaccgtcatatagcccaacatcgccgtcttacagccccacatcacca
tcatacagcccaacatcgccgtcttacagtccgacgtcaccctcatatagtccgacatcg
tctgcatacagccctacttcgcctgcatacagcccaacatctcctggctacagcccaaca
tctccaagctacagcccatcttcgccaagctacaatccttcttcggtcaagtacacgcct
tcacatgcatactctccaagcagcccaaattactacagctcaacatcgccgacatactca
cctacctcaccatcatactcgcaaccaagcccgtcatacagcccaacaagtcgagtggaa
gaagaagcgcatgaggaggctgaagaggaagagccaaaaagatga
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integrated database retrieval system
