Oryza sativa japonica (Japanese rice) (RAPDB): Os05g0364600
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Entry
Os05g0364600 CDS
T02163
Name
(GenBank) Similar to ASF/SF2-like pre-mRNA splicing factor SRP31'''
KO
K12890
serine/arginine-rich splicing factor 1
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os05g0364600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dosa03041
]
Os05g0364600
Spliceosome [BR:
dosa03041
]
Common components
Common spliceosomal components
SR proteins
Os05g0364600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_YTH1
RRM_7
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-ProteinID:
BAF17237
RAP-DB:
Os05g0364600
UniProt:
Q0DIT6
LinkDB
All DBs
Position
5
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AA seq
294 aa
AA seq
DB search
MSRRNSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAQD
AIYGRHGYDFDGHRLRVELAHGGRGPSFDRSSSYSSAGRRGAAKRTDYRVMVTGLPSSAS
WQDLKDHMRRAGDVCFSDVYREGGATIGIVDYTNYEDMKQAIRKLDDSEFRNAFSRAYIR
VREYDSAKRSRSRSRGRSHSRSISRSRSRSRSISRSRSRSYSRSRSPRSRSASRSHSPVK
ERSRSASQSRSPVKERSPSRSPPPATSPPREKSASKSPVKSRSLSRSPSPVKSE
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgagccgacgcaacagccgcaccatctatgtgggcaatctccccggagacattcgcgag
agggaagtggaggatctcttctataagtatggccgtattgtggatattgacttgaaaatt
cctccaaggcctcctggttatgcttttgttgagtttgaagaccctcgtgatgcacaagat
gcaatttatggccgtcatggatatgactttgatggccacaggttgcgggtggagttagct
catggtggcagaggcccttcttttgatcgatcaagtagctatagcagtgctgggcgccgt
ggtgccgctaaacgtactgattaccgagttatggttactggattaccttcgtcagcatca
tggcaagacctcaaggatcatatgaggcgagctggtgatgtctgtttctctgatgtttac
cgtgagggtggagcaactattggaattgttgattataccaactatgaggatatgaaacaa
gcgataagaaagcttgatgactcagagttccgtaatgcattttcacgggcatatatcagg
gtgagggagtatgattctgctaagcgcagccgctctcgttccagaggtagaagccacagc
cgctctatctccagaagcagaagccgcagccgctcgatctccagaagcagaagccgcagt
tatagcagaagcaggagtccaagatctaggtctgcttctcggtctcactcacctgtgaaa
gaaagatctaggtcggcttcacagtctcgctcacctgtgaaggaaagatcaccatcaaga
tccccaccccctgctacttctcctcctcgtgaaaagtcagcaagcaagagccctgtcaag
agcagaagtttatcccgatccccatctcctgtgaaatctgagtga
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