Oryza sativa japonica (Japanese rice) (RAPDB): Os05g0389800
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Entry
Os05g0389800 CDS
T02163
Name
(GenBank) Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8)
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os05g0389800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dosa03041
]
Os05g0389800
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Os05g0389800
Spliceosome [BR:
dosa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Os05g0389800
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
SRP54
nSTAND3
T2SSE
nSTAND_NTPase5
NB-ARC
AAA_7
Motif
Other DBs
NCBI-ProteinID:
BAF17351
RAP-DB:
Os05g0389800
UniProt:
A0A0P0WLZ9
LinkDB
All DBs
Position
5
Genome browser
AA seq
1070 aa
AA seq
DB search
MAASDDGQLRTWVSDRLMALLGYSQGLVARLVVRLARECASAGDLAARLVDLAGFPPSPD
TAAFAEDVYGRVPRSCGGGGDDAGVSEYQRQMQEAAAMAKKQSTIKLLDDDGEIGVSASP
SSGGRKRFRRKAVGEDDDDAGRNARRRRSPDDEEEDGDAGEEEEMERDQIERAQLERNIR
ERDAASTRRLTDRKTTKREQGELARRSDAMDKNDTSGLRRLSRRAYLQRRKEKKVEEMRD
EIVDHEFLFPGVQLTAAEERDMRHKKQVYGLVHDRDDYYRMPDAYDAAANVDQEKRFSVA
RRRYEEPAEAARDGKTANALSEQEAWEEQQIRKSRLQFGSMDRGRRGDEYELLFDDGVEF
VRSTVMAGTAPADDDDTAAAAAADEYHAEAMDAKATLQDERKTLPVYKLKDDLLKAIDEH
KVLIVVGETGSGKTTQIPQYLHEVGYTAGGRKKVACTQPRRVAAMSVAARVAEEMGVKLG
HEVGYSIRFEDCTSEKTVIKYMTDGMLLREFLGEPDLGSYSVVVVDEAHERTLATDILFG
LVKDIARLRPDMKLLISSATLNADKFSDFFDAAPVFRIPGRRFEVGIHYTVAPEADYIDA
AVVTVLQLHVTEPPGGGDILLFLTGQEEIETVEEILRHRLRVLGGKVAELVICPIYANLP
AELQAKIFEPAPAGARKVVLATNIAETSLTIDGIKYVVDPGFCKVKSYNPRTGMESLLVA
PVSRASAEQRAGRSGRTGPGECFRLYTEYNFVSDLDDDAVPEIQRSNLASVVLALKALGI
NDLVGFDFMDPPPAESLLRALEELFALGALNSRGELTKTGRRMAEFPLDPMLSKAIVASE
RYGCSEEVITIAAMLSAGNAVFYRPRDKRVHADAARRAFHAGNAGDHVALLNVYNAWAES
GYSPQWCRESFVQHRTMRRARDVRDQLGALLERVEIAPCSSAGGGDLDAVRKAVTAGYFR
HAARLQRDGSYRAVKSRQTVFVHPSSGVAQAPPRWALYHELVLTTKEYMRQVTELKPEWL
VEIAPHYYERKDVDEPEPKKTAAATTPQEQTTAGSTPTKQTPNLNSFFDV
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgagcgatgatggccagctcaggacgtgggtctccgaccgcctcatggcgctc
ctcggatactcccagggcctcgtggcgcggcttgtcgtccgcctcgcgcgggagtgcgcc
tccgcgggtgacctcgcggcgcggctcgtcgacctcgccgggttcccgccttcccccgac
accgccgcgttcgccgaggacgtgtacgggagggtgccccgcagttgcggcggcggcggc
gacgacgccggggtcagcgagtaccagaggcagatgcaggaggctgcggcgatggccaag
aagcagagcaccatcaagctgctcgacgacgacggcgagatcggcgtttccgcgtcgccc
tccagcggcggcaggaagcgtttcaggaggaaggccgtgggcgaagacgatgacgatgcc
ggacggaacgcgcgacggcggcgtagcccggacgacgaggaggaggacggcgacgccggc
gaggaagaagagatggagcgggatcagatcgagagggcgcagctcgagcggaacatcagg
gagcgcgacgcggcgagcacgaggaggctgacggatcggaagacgaccaagcgggagcag
ggcgagctcgcgcgccggtcggacgccatggacaagaacgacacctcggggctcaggagg
ctctcccggcgcgcgtacctgcagaggcggaaggagaagaaggtcgaggagatgcgcgac
gagatcgtcgaccacgagttcctcttccccggcgtccagctgacggccgccgaggagagg
gacatgaggcacaagaagcaagtctacggcctcgtgcacgatcgcgacgactactacaga
atgccggacgcctacgacgccgccgcgaacgtcgatcaggagaagaggttctcggtggcg
cggcggcggtacgaggagccagctgaggcggcgagggacggcaagacggcgaacgccttg
tccgagcaggaggcctgggaggagcagcagatacggaagtcgaggctgcagttcggatcc
atggatcgcggccggcgcggcgacgagtacgagctcctgttcgacgacggcgtcgagttc
gtcaggtcgacggtgatggcgggcaccgcgcctgcagacgacgacgacacggcggcggcg
gcggcggccgacgagtaccatgccgaggccatggatgccaaggccacgttgcaagacgag
aggaagactctcccggtgtacaagctcaaggacgacctgctcaaggccatcgacgagcac
aaggtcctgatcgtcgtcggcgagaccggctccggcaagacgacgcagataccgcagtac
ctccacgaggtcgggtacacggcgggggggaggaagaaggtggcgtgcacgcagccgcgg
cgcgtggcggcgatgagcgtggcggcgagggtggcggaggagatgggcgtcaagctcggg
cacgaggtcggctactccatccggttcgaggactgcacgtcggagaagacggtgatcaag
tacatgaccgacgggatgctcctccgcgagttcctcggcgagcccgacctgggcagctac
agcgtcgtcgtcgtcgacgaggcccacgagcggacgctcgccaccgacatcctcttcggc
ctcgtcaaggacatcgcccgcctccgccctgacatgaagctgctcatctccagcgcgacg
ctcaacgccgacaagttcagcgacttcttcgacgcggcgcccgtcttccggatccccggg
cggcggttcgaggtgggcatccactacaccgtggcgccggaggcggactacatcgacgcc
gccgtcgtgacggtgctgcagctgcacgtcacggagccccccggcggcggcgacatcctg
ctgttcctcacggggcaggaggagatcgagacggtggaggagatcctgaggcatcggctg
cgggtgctcggcggcaaggtggcggagctggtgatctgccccatctacgccaacctcccc
gccgagctgcaggccaagatcttcgagccggcgccggcgggcgcgcgcaaggtggtgctc
gccaccaacatcgccgagacgtcgctgaccatcgacgggatcaagtacgtggtcgacccg
gggttctgcaaggtgaagtcgtacaacccgcgcaccgggatggagtcgctgttggtggcg
ccggtgtcgagggcgtcggcggagcagcgcgccggccggtcggggcgcaccgggccgggc
gagtgcttccggctctacacggagtacaacttcgtcagcgacctcgacgacgacgcggtg
ccggagatccagcggagcaacctcgccagcgtcgtgctggcgctcaaggcgctcgggatc
aacgacctcgtcggcttcgacttcatggacccgccgccggcggagtcgctgctcagggcg
ctggaggagctcttcgccctcggcgcgctcaacagccgcggcgagctcaccaagaccggg
aggaggatggcggagttccccctggaccccatgctctccaaggccatcgtcgcgtcggag
aggtacgggtgctccgaggaggtgatcaccatcgcggccatgctgtccgccgggaacgcc
gtcttctaccgcccaagggacaagcgggtccacgccgacgccgcacggcgggcgttccac
gccggcaacgccggcgaccacgtcgcgctgctcaacgtgtacaacgcgtgggcggagtcc
ggctactcgccgcagtggtgccgcgagagcttcgtgcagcaccgcaccatgcggcgcgcg
cgggacgtgcgggaccagctgggggcgctgcttgagcgggtggagatcgcgccgtgctcc
tccgccggcggcggcgacctcgacgcggtcaggaaggcggtcacggcgggctacttccgc
cacgctgcgcggctgcagagggacgggtcgtaccgcgccgtgaagagccggcagacggtg
ttcgtccacccgagctccggggtggcgcaggcgccgccgcggtgggcgttgtaccacgag
ctggtgctcacgaccaaggagtacatgaggcaggtgacggagctcaagccggagtggctg
gtggagatcgcgccgcactactacgagcgcaaggacgtcgacgagcctgagcccaagaag
acggcggcggcgactacgccgcaagagcagacgacggccggctctacaccaacgaagcag
actccgaatctgaatagtttcttcgacgtgtaa
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