Oryza sativa japonica (Japanese rice) (RAPDB): Os05g0400700
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Entry
Os05g0400700 CDS
T02163
Name
(GenBank) Similar to DNA-directed RNA polymerase II 19 kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 5)
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03020
RNA polymerase
dosa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Os05g0400700
09124 Replication and repair
03420 Nucleotide excision repair
Os05g0400700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dosa03021
]
Os05g0400700
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os05g0400700
03400 DNA repair and recombination proteins [BR:
dosa03400
]
Os05g0400700
Transcription machinery [BR:
dosa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
Os05g0400700
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Os05g0400700
DNA repair and recombination proteins [BR:
dosa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
Os05g0400700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
SHS2_Rpb7-N
Motif
Other DBs
NCBI-ProteinID:
BAF17397
RAP-DB:
Os05g0400700
UniProt:
A0A0P0WLZ8
LinkDB
All DBs
Position
5
Genome browser
AA seq
177 aa
AA seq
DB search
MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR
EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAV
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atgttcttccacatcgtgctggagcggaacatgcagctgcacccgcggcacttcggcccg
cacctccgcgacaagctcgtctccaagctcatcaaggacgtcgagggcacctgcagcggg
cggcatgggttcgtggtggcgatcacgggggtggaggatgtcggcaaggggctcatcagg
gagggcacgggctacgtcaccttcccggtcaagtaccagtgcgtcgtcttccgccccttc
aagggcgagatcctggaggccgtcgtcaccatggtcaacaagatggggttcttcgcggag
gctgggcctgtgcagatcttcgtgtccaaccatttgattcctgatgatatggagttccaa
tctggggatgtgccaaattatactacttctgatggatcggtgaaaattcagaaagatagt
gaggttcggttgaagattattgggacacgtgttgatgcaacagaaattttttgcattggc
acaataaaagatgacttcctgggcgttatcagtgatcctggtgcggcagtgtaa
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