Oryza sativa japonica (Japanese rice) (RAPDB): Os05g0543300
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Entry
Os05g0543300 CDS
T02163
Name
(GenBank) WD40-like domain containing protein
KO
K14962
COMPASS component SWD2
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
Os05g0543300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os05g0543300
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os05g0543300
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
Os05g0543300
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
Os05g0543300
COMPASS/SET1 complex (yeast)
Os05g0543300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
ANAPC4_WD40
WDR55
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
eIF2A
PQQ_3
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_DCAF12
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_IFT122_2nd
AC_1
Motif
Other DBs
NCBI-ProteinID:
BAF18117
RAP-DB:
Os05g0543300
UniProt:
Q0DGA6
LinkDB
All DBs
Position
5
Genome browser
AA seq
320 aa
AA seq
DB search
MAATLSQLDDGIVRGMAIGAVFTDYAGKINCLDFHRKEDLLVTSSEDDSIRLYNITSATL
LKTTYHRKHGADRVCFTHHPSSILCSSRYNLESAESLRYLSLYDNRCLRYFKGHKDRVVS
LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSVAYDQQGLVFAVAMEGGAIK
LFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKRCGFS
LESSPNVATEAAFTPDGQYVISGSGDGTLHAWNINTIQEIACWNSHIGPITALKWAPRRA
MFATASTALTFWIPNNSSSN
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacgctgtcgcagctcgacgacgggatcgtccgcgggatggccatcggcgcg
gtattcaccgactacgctgggaagataaactgcctcgacttccaccgcaaggaggatctc
ctcgtcacctccagcgaggacgactccatacgcctctacaacatcaccagcgccacgttg
ttgaagactacatatcataggaaacatggtgctgaccgtgtctgtttcactcaccatccg
agttctatcttatgttcatcaagatacaatctagagtcagcagagtcacttcgttattta
tcactgtatgacaaccgttgcttaagatattttaaaggacacaaagacagggttgtttca
ctatgtatgtcacctgtcaacgatagttttatgtcaggatcacttgatcacagtgtcagg
atatgggatcttcgtgtaaatgcttgtcagggtatactacgtttgcgtggtaggccttct
gttgcatatgatcagcagggacttgtttttgccgtggcaatggaaggaggtgctattaag
ctatttgattcccggtcatatgacaaaggtccctttgacactttcttggttggtggagat
acagctgaagtttctgacatcaaatttagcaatgatggcaagtccatgcttttgacaaca
accaacaaccatatatatgttctggatgcatatggaggggataagaggtgtggctttagt
ctggagtcatctcccaatgtagcaactgaagctgcttttactccagatggccaatatgta
atttcaggatctggtgatggtaccttgcatgcttggaacatcaatacaatacaagagatt
gcttgttggaacagtcacatcggtcctatcactgctttgaagtgggctccccgtcgagca
atgtttgcaactgcgtcaactgccctaactttctggattcccaacaattccagttcgaat
tag
DBGET
integrated database retrieval system
