Oryza sativa japonica (Japanese rice) (RAPDB): Os06g0144200
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Entry
Os06g0144200 CDS
T02163
Name
(GenBank) Similar to Pectate lyase homolog (EC 4.2.2.2)
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa00040
Pentose and glucuronate interconversions
dosa01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Os06g0144200
Enzymes [BR:
dosa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Os06g0144200
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
DUF2505
NosD
Motif
Other DBs
NCBI-ProteinID:
BAF18695
RAP-DB:
Os06g0144200
UniProt:
A0A0P0WSR5
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All DBs
Position
6
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AA seq
450 aa
AA seq
DB search
MDIYTTSHHSTIMAASSVTGSRRLCILFYLLTVVATVVTAASAHTAHNATADEEYWEKRA
EEARSFNRAAYVSDPVATLNRFNADVLRATTRRSLARYTGPCMATNPIDRCWRCRDDWAT
DRKRLARCVRGFGHRTVGGAAGKIYVVTDASDDEMVIPRKGTLRYGVIQDRPMWIVFARD
MIIQLRQELIVNHNKTIDGRGAQVHITGAQITLQGVQHVIIHNVHIHHSVPHGGGMIRDS
KRHYGLRTRSDGDGISIMSSSNIWIDHVSMSNCSDGLIDAVSGSTAITISNGHFTKHDHV
MLFGASNSDAQDEVMQITVAFNHFGKGLVPRCRFGFFHVVNNDYTHWLMYAIGGNMNPTI
ISQGNRFIAPDDLNAKEVTKREYTPYDEYKEWVWKSQGDVMMNGAFFNESGGQNERSYDQ
LDFIPAKHGKYVGQLTKFAGTLNCHVGMPC
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggatatatatacgacatcacatcacagcacaataatggcagcctcctccgtcacgggg
agccgccgcctctgcattctcttctacctcctcactgtcgtcgccaccgtggtcaccgcg
gcgtcggcgcacacggcgcacaacgccaccgccgacgaggagtactgggagaagcgcgcc
gaggaggcccgctcgttcaaccgcgccgcctacgtgagcgaccccgtcgccaccctgaac
cgcttcaacgccgacgtgctccgcgccaccacgcgccgctcgctggccaggtacaccggc
ccgtgcatggcgaccaaccccatcgaccgctgctggcgctgccgcgacgactgggccacc
gaccggaagcggctggcgcggtgcgtccgtgggttcggccacaggaccgtcggcggcgcc
gctggcaagatctacgtggtgaccgacgccagcgacgacgagatggtcatcccgaggaaa
gggacgctccggtacggcgtgatccaggaccggccgatgtggatcgtgttcgcgcgcgac
atgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccgt
ggcgcgcaggtgcacatcaccggcgcccagatcacgctccagggcgtccagcatgtgatc
atccacaacgtccacatccaccactcggtgccgcacggcggcggcatgatccgcgactcc
aagcgccactacggcctccgcacgcgcagcgacggcgacggcatctccatcatgtcctcc
tccaacatctggatcgaccacgtctccatgtccaactgctccgacggcctcatcgacgcc
gtcagcggctccaccgccatcaccatctccaacggccacttcaccaagcacgaccacgtc
atgctcttcggcgccagcaacagcgacgcccaggacgaggtgatgcagatcaccgtggcg
ttcaaccacttcggcaagggccttgtgccgcgctgcaggttcggattcttccacgtcgtc
aacaacgactacacgcactggctcatgtacgccatcggtggcaacatgaacccgacgatc
atcagccaggggaacaggttcatcgcgcccgacgacttgaacgccaaggaggtgaccaag
agggagtacacgccgtacgacgagtacaaggagtgggtgtggaagtcgcagggcgacgtg
atgatgaacggcgccttctttaacgagtccggcggccagaacgagcgcagctacgaccag
ctcgacttcatccctgccaagcacggcaagtacgtcggccagctcaccaagttcgccggc
acgctcaactgccacgtcggcatgccatgctaa
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