Oryza sativa japonica (Japanese rice) (RAPDB): Os06g0256200
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Entry
Os06g0256200 CDS
T02163
Name
(GenBank) Similar to Keratinocytes proline-rich protein
KO
K12881
THO complex subunit 4
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03013
Nucleocytoplasmic transport
dosa03015
mRNA surveillance pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os06g0256200
09122 Translation
03013 Nucleocytoplasmic transport
Os06g0256200
03015 mRNA surveillance pathway
Os06g0256200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os06g0256200
03041 Spliceosome [BR:
dosa03041
]
Os06g0256200
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
Os06g0256200
TREX complex
Os06g0256200
Spliceosome [BR:
dosa03041
]
Complex C
Other components
EJC/TREX
Os06g0256200
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
Os06g0256200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_10
RRM_3
GRP0
Motif
Other DBs
NCBI-ProteinID:
BAF19228
RAP-DB:
Os06g0256200
UniProt:
Q652G7
B7E750
LinkDB
All DBs
Position
6
Genome browser
AA seq
294 aa
AA seq
DB search
MATSLDMSLDDMIKNNRNSRGRGRGRSQGGGRGRGDGQRFSYGSGRGRGAGTFRGRGVGV
PSRRPLGVSTRSSSYAIAKSFNKTKDIVWRQDLFEDSMVAAGLSVTESSTKLYISNLHYG
VTKEDIQELFSEMGHLKHCAVHYDNNRRPTGSAEVIFTRRSEAVAALKRYNNVRLDGKPM
KIEVIGADLGMAAPSAPRVSVVPGARGRGQREVVMMPGGSGFGRGAAGSSNFIPGWKRNN
FAQRGGQGRGRGRGRNNFGRGRGRGYVRKGPVEKSAEQLDKELDSYHSGAMNVD
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggcgacatctttggatatgtcactggacgatatgattaagaacaacagaaattctagg
gggagaggaaggggtaggtcacagggaggaggtcgaggcagaggtgatggccaaaggttc
agctatggttcagggcgtggacgtggtgctggcaccttccgtggaaggggagtaggagtg
ccttcacgaaggccacttggtgttagtactcggtcatcatcgtatgctattgccaagtca
ttcaacaaaaccaaggatattgtatggaggcaagatctgtttgaggacagcatggttgct
gctggcctttctgtgacagaatctagtacaaagctgtatatttcaaacttgcactatgga
gtgacaaaagaagatatacaggaacttttttccgagatgggtcatttgaagcattgtgct
gttcattatgataacaatagacgcccaactggttcagctgaggtgatattcactaggagg
agtgaagcagttgcggctttaaaacgatataataatgtgcgccttgatgggaagccaatg
aagatcgaagtgataggagcagatttgggtatggctgctccttcagcaccccgtgttagt
gttgtccctggtgcaaggggtagaggacagcgagaagttgtaatgatgcctggtgggagt
gggtttggtcgaggtgcagctggttcatctaatttcattcctgggtggaagcgtaacaat
tttgcacaaagaggtgggcaaggccgaggtcgtggccgtggacgtaataactttgggcgt
gggcgtgggcgtggctatgttcggaagggacctgtggagaaatcagctgagcaattggac
aaggagctggatagctatcattccggggcaatgaatgtcgactaa
DBGET
integrated database retrieval system
