Oryza sativa japonica (Japanese rice) (RAPDB): Os06g0300800
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Entry
Os06g0300800 CDS
T02163
Name
(GenBank) WD40-like domain containing protein
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Os06g0300800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dosa03019
]
Os06g0300800
Messenger RNA biogenesis [BR:
dosa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Os06g0300800
mRNA degradation factors
5'-3' decay
Decapping complex
Os06g0300800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
DUF445
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_EDC4L
DUF6277
Motif
Other DBs
NCBI-ProteinID:
BAF19367
RAP-DB:
Os06g0300800
UniProt:
A0A5S6RBK4
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All DBs
Position
6
Genome browser
AA seq
1187 aa
AA seq
DB search
MQLLGNTAPTHLESAVSMPMPSEFSAAAAVAPPAPLPAMPSAPPARMPSSSSSKMPRGRL
LGPGDRAVHDVDSRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNI
RVLNINTALRSLLRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWKIDEGPDEQNKPQIT
GKIEIAIQIVGDAETYHPRICWHSHKQEILFVGVANCVLKIDTTKVGRGMDFSREEPLKC
PLDKLVDGVHLVGKHDADITDLSLSQWMTTRLASASKDGMVKIWDDRKSVPLSVLKPHDG
QAVYSVSFLTAPEHPQHINLITAGPLNREVKIWASTNDEGWLLPSDSETWRCTQTLELVS
SLEHRFEEAFFNQVAVLPQASLILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMP
ILSLTGTHESQLDTEQIVQVYCVQTMAIQQYGLELSLCLPPTADNPGFGRDPAISHVYER
PPAEVTVVESSKETSLIDSSVVGPTKPASNNQALEANVPSQVQSTTPPSSIDLGYLEEGA
LRRGPSRGPSLGDRDIDPSSLDYSSKKRMDSDGASGQGSFGRKDSFGKEEPRGSQGDGVL
SSPETIATGSSQNVEVDAKHVDGRKSERSVELEAVKETQIVHEKRERPPKTAEQTVNTIS
ERLVTTDKYSVEDSQSRSADGSVSTLLKHPSGAGDENTVSEAPEKTSDGYASRNLQLTLA
TKEEKVLHPQVSRQLSPSTSTYNSADSSHEPPSNVNPPIDNVPQVGIQETLQQLMAMHSD
LQKQLSTIVSAPIAKEGKRIETSLGRNMEKSIKANIDAMWARFQEENAKHEKAERERMQH
ITTLITTAVNKDIPVMLEKSLKKEISSVGPAVARTTAPIIEKSLSSAVSDSLQKVLGDKV
VNQLDKSLSTKLEATVARQIQTQFHTSAKQALQDALRSSFESTIIPAFEQSCKTMFEQVD
GAFQKGMSEHGAAIRQQVATAHTPLAQTLRETIASASSINQGLASELLDGQRKLLALVSS
GGSLSHNTSVLQPSNGPVASLPEVDAPLDPVKELSRLISERKFDEAFTMALQRSDVSIVS
WLCSQVDLHELCRMNPIPLNQGVLLALFQQLACDIVNDTPRKLEWMTAVAVAISPTDPMI
AVHVRPIFEQVYGVLNHQRSLPASSSSEATNIRLIMHVINSVLLTYK
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgctcgggaacacggcgcccacgcacctcgagtcggcggtgtccatgccgatg
ccgtcggagttctccgccgccgcggctgtggcgccgcccgcgccgctgcccgcgatgccg
tccgcgccgcccgcgaggatgccgagcagcagcagcagcaagatgccgagggggaggctc
ctggggccaggggaccgggccgtgcacgacgtggactcgcggctgccaggcgaggcgcag
ccgcctcagctggaggtgacgcccatcaccaagtacacgtcggacccggggctggtgctc
ggcaggcagatcgccgtgaaccggacctacatcgtgtatggcctcaagctcggcaacatc
cgcgtgctcaacatcaacaccgcgcttcgctcgctcctccgcgggcacacacagagggtt
acggacatggctttctttgcggaagatgtccatcggttagcaagtgcaagtgtagatggg
cggatctatgtatggaagattgacgagggacctgatgagcagaataaaccacaaatcaca
ggaaagattgaaattgccatacagattgtaggagatgctgaaacttaccatccaagaata
tgttggcactcccataagcaagagattctgtttgttggagttgctaactgcgtcttaaaa
atagacacaacaaaagtaggaagaggaatggacttcagtagagaagaacctcttaaatgc
ccactcgacaagctggtcgatggcgttcacttggttggtaaacatgatgcagatattaca
gatttgtccctatctcaatggatgactactcgtcttgcttccgcatcaaaagatggcatg
gtaaagatctgggatgatcgcaaatctgtgcctctgtctgttctgaaaccacatgatggt
caagctgtttactctgtttctttccttacggcacctgagcatccccagcatataaatctc
atcacagcaggccctctcaatcgagaagtaaaaatttgggcttccactaatgatgaaggt
tggttgttgccaagtgactctgagacatggagatgcactcaaacactggagctcgtgagt
tctctggaacataggtttgaggaagcatttttcaaccaagtagcagtgttgccacaagct
agccttattttgcttgcaaatgccaaaaagaatgctatttatgctgtgcatgttgaatat
ggcccagatcctgcttctactagattggactatatagcggattttacagttgcaatgcct
attctaagtctgacaggaacacacgaaagccaactggatactgaacagatagttcaagtg
tattgtgtccagacaatggctatccagcagtatggattggaattatctctttgtttgcct
cctacagctgataatcctgggtttggtagagatccagctatttctcatgtgtatgagaga
cctccagcagaagtaactgtggtggagtcatccaaggaaactagtctgattgattcctct
gttgttggtccaactaaaccagcaagcaataatcaggccctagaagcgaatgtcccttcg
caagttcaatccacaactcctccatcaagcattgaccttggatatttagaagaaggtgcc
ttgagaagaggtccttcaagaggtccatctcttggtgatcgtgatatagacccgtcatct
cttgattattcaagtaagaaaaggatggattctgatggtgcaagtgggcaaggttcattt
ggtaggaaggatagtttcggaaaggaagagccaagaggcagccagggtgatggtgtcctt
tcgtctccagaaacaattgctactggcagttctcaaaatgtagaagtggatgctaaacat
gtggatgggagaaaatcagagcgaagtgttgaacttgaagctgtcaaggagacacaaatt
gttcatgagaaaagggagagacctcccaagactgctgaacaaactgtaaacacaatcagt
gaacgcttggtaacaactgacaaatacagtgtggaagattcacaatctcggagtgctgat
ggatcagtatctacacttttgaaacatccttctggtgctggggatgaaaacactgtaagt
gaagctccagagaaaactagtgatggttatgcttctaggaacttgcagttaaccttggct
accaaggaggagaaagttcttcatcctcaagtttctaggcagttatctccttctacaagc
acttacaactctgctgattcctctcatgaacctccaagcaacgtaaaccctcctattgat
aacgttccacaagttggtattcaagaaacactacaacagctaatggccatgcatagtgac
ctgcaaaagcagctgagcacaattgtatctgctcctattgcaaaggaaggcaaaaggatc
gagacatctttaggtcgtaacatggaaaagtccattaaggcgaacattgatgccatgtgg
gcccgtttccaggaggaaaatgcaaagcatgaaaaggctgaaagagagcgtatgcagcat
atcactactctcatcacaactgctgtaaacaaggatattcctgttatgctggagaagtcc
ctaaagaaagaaatatcttcagttggacctgctgttgcacggacaacagctcctatcatt
gagaaatcactatcttctgctgtttctgattcactccagaaagttcttggtgacaaggtt
gtgaatcaactggacaaatccctaagtacaaaacttgaagctacagtagctaggcagatc
caaacgcagtttcatacgtctgccaagcaggcccttcaggatgctttgcgctctagcttt
gagtcaacaatcattccagcatttgaacaatcttgcaagacaatgtttgagcaagtagat
ggtgcattccagaaaggcatgtctgagcatggtgctgctatccgtcagcaggttgcaaca
gcacatactccactagcacaaactctcagggaaacaatcgcttcagcatcatcgataaac
cagggtcttgcatcagagttgcttgatggacagcgtaagcttttggcacttgtttcatcg
gggggctccttatcgcataatacaagtgttctgcagcctagtaatggaccagtggctagt
ctccctgaggtcgatgctccactggatcctgttaaggagctaagcagactgatatctgag
cgcaaatttgatgaagcatttacaatggctcttcaaagaagtgatgtctccatagtgtct
tggctgtgctctcaggtcgatctgcacgagttatgcagaatgaaccccattcctctcaac
caaggggtcctgttggcccttttccagcaactagcatgtgacatcgtcaatgacacgccc
agaaagcttgagtggatgacggctgttgctgttgcaatcagtccaacagatcctatgatc
gctgtgcatgtgaggccgatattcgagcaggtctatggcgttttgaaccaccaacggtca
ctgccagcaagcagttcctcggaagcgaccaacatccgtttgatcatgcacgtaatcaac
tcggtgctgctgacctacaagtga
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