Oryza sativa japonica (Japanese rice) (RAPDB): Os06g0583400
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Entry
Os06g0583400 CDS
T02163
Name
(GenBank) Similar to Histone deacetylase (Fragment)
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03082
ATP-dependent chromatin remodeling
dosa03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
Os06g0583400
03083 Polycomb repressive complex
Os06g0583400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os06g0583400
Enzymes [BR:
dosa01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
Os06g0583400
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
Os06g0583400
HDAC complexes
Sin3A-HDAC complex
Os06g0583400
BRAF-HDAC complex
Os06g0583400
REST complex
Os06g0583400
SHIP complex
Os06g0583400
MiDAC complex
Os06g0583400
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
Os06g0583400
Heterochromatin formation proteins
Other heterochromatin formation proteins
Os06g0583400
Chromatin remodeling factors
NuRD complex
Os06g0583400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-ProteinID:
BAF19857
RAP-DB:
Os06g0583400
UniProt:
Q7Y0Y8
LinkDB
All DBs
Position
6
Genome browser
AA seq
518 aa
AA seq
DB search
MDASAGGGGNSLPTAGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGL
LDQMQVLKPHPARDRDLCRFHADDYVAFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLY
SFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQ
RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPL
DDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFM
RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNEYFEYFGPDYTLHVAPS
NMENKNTRQQLDDIRSRLLDNLSKLRHAPSVQFQERPPEAELPEQDEDQEDPDERHHADS
DVEMDDVKPLDDSGRRSSIQNVRVKRESAETDAADQDGNRVAAENTKGTEPAADGVGSSK
QTVPTDASAMAIDEPGSLKVEPDNSNKLQDQPSVHQKT
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggacgcctccgccggaggcggggggaactcgctgccgacggcgggggccgacggggcc
aagcggcgggtgtgctacttctacgacgcggaggtggggaactactactacgggcagggg
cacccgatgaagccgcaccgcatccggatgacccacgcgctgctcgcccactacggcctc
ctcgaccagatgcaggtgctcaagccccacccggcgcgcgaccgcgacctctgccgcttc
cacgccgacgactacgtcgccttcctccgctccgtcacgccggagacccagcaggaccag
atccgggcgctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctctac
agcttctgccagacctacgccgggggatccgtcggcggcgccgtcaagctcaaccacggc
cacgacatcgccatcaactgggccggcggcctccaccacgccaagaagtgcgaggcctcg
ggattctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaaataccaccag
cgtgttctctatgtggatatcgatatccaccatggggatggtgtggaggaggcgttctac
acgacggacagggtgatgacggtctcgttccacaagtttggggattatttcccggggacc
ggggacattcgcgatattgggcactcaaaggggaagtattactctctgaatgtcccgttg
gacgacggtatcgacgacgagagctaccagtcgttgttcaagccgatcatggggaaggtg
atggaggtttttcgccctggcgcggtggtgctccagtgcggtgcggactctctgtcgggt
gataggttgggttgcttcaacctgtcaatcaggggccacgcggaatgcgtgagattcatg
aggtccttcaatgtcccgctgttgctgcttggtggtggtgggtataccataagaaatgtt
gcgcggtgttggtgctatgagacaggagttgcacttggtcatgagctcactgacaagatg
cctccaaatgagtattttgagtactttggtccagattatacacttcatgttgcaccaagt
aacatggagaacaaaaacacacgccagcagttggatgatataagatcaagacttcttgat
aatctttcaaaacttcgacatgctcctagcgtccaatttcaagagcgaccccctgaggct
gagctacctgagcaagatgaagaccaagaggatcctgatgaaaggcaccatgctgattct
gatgtggaaatggatgatgtcaaacctttggatgactcaggaaggaggagcagtattcag
aatgtgagagttaagagagagtctgctgaaacagatgccgcagatcaggatggtaatagg
gtcgctgcagagaacaccaagggcacagaacctgcggctgatggagttggttcctcgaaa
caaactgttcctaccgatgcaagtgcgatggccatagacgaaccaggctccctgaaagtc
gagccagataactcaaacaaattgcaagatcaaccatcggtgcaccagaagacataa
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integrated database retrieval system
