Oryza sativa japonica (Japanese rice) (RAPDB): Os06g0649500
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Entry
Os06g0649500 CDS
T02163
Name
(GenBank) WD40-like domain containing protein
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Os06g0649500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dosa03021
]
Os06g0649500
03036 Chromosome and associated proteins [BR:
dosa03036
]
Os06g0649500
Transcription machinery [BR:
dosa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
Os06g0649500
Coactivators
SAGA/TFTC/STAGA complex
Os06g0649500
Chromosome and associated proteins [BR:
dosa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
Os06g0649500
STAGA complex
Os06g0649500
TFTC complex
Os06g0649500
SAGA complex
Os06g0649500
SLIK complex
Os06g0649500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
Beta-prop_Nup120_160
RecX_HTH3
WD40_like
Beta-prop_VPS8
Cytochrom_D1
PALB2_WD40
Motif
Other DBs
NCBI-ProteinID:
BAF20131
RAP-DB:
Os06g0649500
UniProt:
A0A0P0WZB6
LinkDB
All DBs
Position
6
Genome browser
AA seq
654 aa
AA seq
DB search
MEDEEMEKKVQQYLQRKGFRLTELALQEERNRISTSSVSDVALARSENDPARYYDGYSKL
RTWAYSSLDQYKHELLRVLYPVFIHSFMDLVAEGHTQEARSFFHTFHEDHELMHSRDLQK
LEGILSPSHLEEMELARSLRKNQFRIKLCEYSYELLLQYLQKTQALVVLGIINERTTFDV
SPGQPSLISDDTDVVALVGTKKDLAKQINLKEVHWGLLEDSVEERMEKTLLESDKTEAES
KDADAEDNNKRKSSEGGKQGGSVKKVKKDKIAGATGKTNKSETSIVSVAPRVKPELTLPV
IPVEVEQSILEDLRNRAQLNSLALPSVSFYTFLNTHNGLNCSSISHDGSLVVGGFSDSSV
KVWDMSKIGQPPKTSSPQGENGLSQGERTSASDYGKRPYTLFQGHSGPVYSAAFSPFGDF
LLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDKI
QPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLAM
SPDGRYMASGDEDGTIMMWDLSSGRCVSPLGGHSSCVWSLAYSCEGALLASGSADCTVKL
WDVASSTKVLKTDDTSTNRLRMLKTLRTKSTPVYTLRFSRRNLLFAAGALSLGS
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaggtgcagcagtacctgcagcggaaggggttccgc
ctcaccgagctcgcgttgcaggaggagcgcaaccgcatctccacctcctccgtctccgac
gtcgcgctcgccaggtcggaaaatgatccggcaagatactatgatggttatagtaaacta
agaacatgggcatacagttctctcgatcagtacaagcatgaattactccgtgtcctttac
ccagtgtttatccattccttcatggatctagtggcagagggacatacacaggaagctcgg
tcctttttccacacgttccatgaagaccatgaactgatgcattctagggatctccagaaa
ctggaaggcattctttctccttcacatttggaggaaatggaactggccagatctttaagg
aaaaatcaattcagaattaagttatgtgagtattcatatgagttactcctccagtatctc
cagaaaacacaagctcttgtggttcttggaataataaatgaacgcacaacttttgacgta
tcccctggtcagccatctttaatctctgatgacacggatgttgttgctctagttggaaca
aagaaggatttggcaaaacaaataaatctgaaggaggtgcattgggggttgcttgaagat
tcagttgaagagcgcatggagaaaacacttttagaatcagataaaactgaagcagaaagc
aaggatgcagatgccgaagataacaataagagaaaatcttcggaaggtggaaagcaggga
ggttctgttaaaaaggtcaaaaaagataagattgcaggagccacagggaaaaccaataaa
tctgaaacaagcatagtttcggtggcacctcgtgtgaaaccagagcttacacttccagtg
attcctgttgaagtcgagcagtcaattcttgaggatttgcgaaaccgtgcacagttgaat
agcctggcattgccatctgttagcttctacacattccttaatactcataatgggctaaat
tgctcatcaatttcacatgacggctctttggttgtgggtggattctctgactcatcagtg
aaggtttgggatatgtcaaagattggccaaccgccgaaaacatctagtccacaaggagag
aatggactttcccagggtgagcgcacatcagcatcagattatggaaaaagaccttataca
ttattccaaggtcattctggaccagtttattccgctgcatttagcccattcggagatttt
ctcttgtcatcatcctcagactcaacaattcgactatggagtaccaagttgaatgctaat
cttgtttgctacaaaggacacaactaccctgtttgggatgtacaatttagcccagttggt
cattattttgctagcgcttctcatgacaggactgctagaatttggtcaatggataaaatc
cagcctttgcggataatggctggacatctctctgatgttgattgtgtgcagtggcatgtt
aactgtaactacattgccaccggctctagtgacaaaactgtaagattatgggatgttcaa
actggtgaatgtatacggatgttcattggccataggagtatggttttatcattggctatg
tctcctgatgggcgatacatggcctccggagatgaagatggaaccatcatgatgtgggat
ctctcttctggtcggtgcgtttcaccacttgggggacacagctcttgtgtgtggtcactt
gcttacagttgtgaaggggcattgcttgcatctggatcagccgactgcactgtgaaactc
tgggatgttgcctccagcacgaaggtccttaagacagatgatacctcaactaaccggctg
aggatgctcaaaactctccgtacaaaatcaactcctgtttatactctgcggttttctcgg
cgaaatcttttatttgcggctggtgctctctcacttggctcctaa
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