KEGG   Oryza sativa japonica (Japanese rice) (RAPDB): Os06g0653800
Entry
Os06g0653800      CDS       T02163                                 
Name
(GenBank) Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP) (U5 snRNP- specific 40 kDa protein) (38 kDa splicing factor)
  KO
K12857  Prp8 binding protein
Organism
dosa  Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dosa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Os06g0653800
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dosa03041]
    Os06g0653800
Spliceosome [BR:dosa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    Os06g0653800
 Complex C
   U5 SnRNP specific factors
    Os06g0653800
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_SPT8 NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_IFT122_1st WD40_RFWD3 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_IFT140_1st eIF2A Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_IP5PC_F Ge1_WD40 Beta-prop_Nup120_160 Beta-prop_RIG_1st PEP5_VPS11_N WD_LRWD1
Other DBs
NCBI-ProteinID: BAF20155
RAP-DB: Os06g0653800
UniProt: Q0DAG8
LinkDB
Position
6
AA seq 343 aa
MFPPGNNSLALSAPRPGMELANIQQHPNQALGPGGKQRTSSLEAPIMLLTGHQSAVYCMK
FNPAGTVIASGSHDKDIFLWYVHGDCKNYMVLRGHKNAVLDLQWTTDGTQIISASPDKTV
RVWDVETGKQVKKMAEHSSFVNSCCPARKWPPLVVSGSDDGTAKLWDLRQRGAIQTLPDK
YQITAVSFSEAADKVFTGGLDNDVKWWDLRKNEVTEYLKGHQDMITGMQLSPDGSYLLTN
AMDNELKIWDLRPYAPENRNIKTLTGHQHNFEKNLLKCSWSPDNRKVTAGSADRMVYIWD
TTSRRILYKLPGHNGSVNETAFHPTEPVIGSCGSDKQIYLGEL
NT seq 1032 nt   +upstreamnt  +downstreamnt
atgttccccccaggcaacaattctttggctctttcagccccaaggccaggaatggagctg
gctaacattcaacagcatcctaatcaagctcttgggcctggtgggaagcaacgtacatcc
agtctggaggccccaataatgctactcacaggccatcagagcgctgtgtactgtatgaag
ttcaaccctgcaggaactgtgatagcatcaggctcccatgacaaggatatcttcttgtgg
tatgtccatggtgactgtaagaactacatggtactgagagggcacaagaatgctgttctt
gaccttcaatggactactgatgggactcagatcatctctgcaagccctgacaagactgtg
agagtgtgggacgttgagactggcaagcaagtcaagaagatggccgagcactcatctttt
gtcaactcatgttgcccggctcgaaagtggccacctctggttgtaagtggatcggatgat
ggaacagcaaagctgtgggatttgcgtcaaagaggtgctatacaaacacttcccgacaag
taccagattacagccgtcagcttctcagaggcggcagataaggttttcactggtggccta
gacaatgatgtcaaatggtgggatctccgtaagaatgaagtgacagagtatctcaaagga
caccaggacatgataaccggaatgcagcttagtccagatgggtcttatctcctaaccaat
gcaatggacaatgagctcaaaatctgggacttgcgcccttacgccccagagaaccggaac
atcaagaccctcacaggacaccagcataactttgagaagaacctgttgaagtgcagctgg
tcccctgataatcgcaaggtcactgccgggagtgctgatcgcatggtctacatctgggac
acaacatcaaggcggatcttgtacaagcttcctggccacaacggttctgtcaacgagacc
gcattccatcccaccgagcctgtcattggatcttgcggcagtgacaagcagatttatctt
ggggagctttaa

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